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Sample GSM31772 Query DataSets for GSM31772
Status Public on Nov 01, 2004
Title Fig2 10e11 mir124a rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 7080 7700 150 2613 2604 185 7 2983 2983 2970 234 7 0 0 0 156 1272 100 -370 -379 -370 -379 406229 -1.564 -50
101285 1 1 2 mmu-mir-23b 7080 8090 150 2495 2503 211 8 2887 2887 2873 288 10 0 0 0 156 1272 100 -392 -384 -392 -384 390475 -1.285 -50
101021 1 1 3 mmu-mir-125b 7080 8490 150 2600 2597 177 6 2847 2847 2856 213 7 0 0 0 156 1272 100 -247 -250 -247 -250 405163 -1.216 -50
100751 1 1 4 miR-106a 7080 8890 150 2650 2632 214 8 2890 2890 2891 199 6 1 0 0 156 1272 100 -240 -258 -240 -258 410560 -1.302 -50
100475 1 1 5 hsa-mir-211 7080 9290 150 2483 2482 159 6 2891 2891 2871 240 8 0 0 0 156 1272 100 -408 -409 -408 -409 387230 -1.621 -50
100115 1 1 6 ath-miR319 7080 9690 150 2891 2904 264 9 2930 2930 2970 300 10 11 0 0 156 1272 100 -39 -26 -39 -26 452981 -0.22 -50
101381 1 1 7 rno-miR-325 7080 10090 150 2621 2705 396 14 2968 2968 2970 292 9 7 5 0 156 1272 100 -347 -263 -347 -263 422004 -0.908 -50
101117 1 1 8 mmu-mir-145 7080 10490 150 2968 2958 176 5 2955 2955 2962 163 5 16 3 0 156 1272 100 13 3 13 3 461519 -0.025 -50
100020 1 2 1 ath-miR158 7470 7690 150 2623 2624 211 8 2940 2940 2924 223 7 0 0 0 156 1272 100 -317 -316 -317 -316 409384 -1.345 -50
101286 1 2 2 mmu-mir-23b 7480 8090 150 2434 2447 229 9 2879 2879 2875 235 8 0 0 0 156 1272 100 -445 -432 -445 -432 381660 -1.821 -50
101022 1 2 3 mmu-mir-125b 7480 8490 150 2561 2553 174 6 2828 2828 2841 207 7 1 0 0 156 1272 100 -267 -275 -267 -275 398319 -1.391 -50
100752 1 2 4 miR-106a 7480 8890 150 2668 2639 190 7 2900 2900 2920 289 9 0 0 0 156 1272 100 -232 -261 -232 -261 411753 -0.972 -50
100476 1 2 5 hsa-mir-211 7480 9290 150 2366 2368 181 7 2848 2848 2824 255 9 0 0 0 156 1272 100 -482 -480 -482 -480 369478 -1.788 -50
100116 1 2 6 ath-miR319 7480 9690 150 2906 2949 377 12 2855 2855 2889 274 9 27 11 0 156 1272 100 51 94 51 94 460005 0.219 -50
101382 1 2 7 rno-miR-325 7480 10090 150 2525 2550 203 7 2947 2947 2929 233 7 0 0 0 156 1272 100 -422 -397 -422 -397 397827 -1.627 -50
101118 1 2 8 mmu-mir-145 7480 10490 150 3006 3034 225 7 3092 3092 3118 248 7 7 1 0 156 1272 100 -86 -58 -86 -58 473364 -0.339 -50
100403 1 3 1 hsa-mir-197 7870 7690 150 1922 2035 390 19 2916 2916 2828 383 13 0 0 0 156 1272 100 -994 -881 -994 -881 317472 -2.07 -50
100043 1 3 2 ath-miR161 7880 8090 150 2435 2454 184 7 2847 2847 2832 227 8 0 0 0 156 1272 100 -412 -393 -412 -393 382875 -1.665 -50
101309 1 3 3 mmu-mir-30e 7880 8490 150 2387 2404 233 9 2872 2872 2859 227 7 1 1 0 156 1272 100 -485 -468 -485 -468 374981 -2.004 -50
101045 1 3 4 mmu-mir-132 7880 8890 150 2272 2241 237 10 2890 2890 2868 317 11 0 0 0 156 1272 100 -618 -649 -618 -649 349661 -1.978 -50

Total number of rows: 1536

Table truncated, full table size 198 Kbytes.




Supplementary data files not provided
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