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Sample GSM31774 Query DataSets for GSM31774
Status Public on Nov 01, 2004
Title Fig2 zero mir124a rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6160 8380 150 6052 6050 859 14 8217 8217 8061 942 11 0 0 0 156 1272 100 -2165 -2167 -2165 -2167 943857 -2.135 -50
101285 1 1 2 mmu-mir-23b 6160 8770 150 4568 4979 3254 65 8091 8091 7944 1036 13 0 0 0 156 1272 100 -3523 -3112 -3523 -3112 776748 -2.862 -50
101021 1 1 3 mmu-mir-125b 6160 9170 150 5328 5264 829 15 7979 7979 7861 947 12 0 0 0 156 1272 100 -2651 -2715 -2651 -2715 821224 -2.742 -50
100751 1 1 4 miR-106a 6160 9570 150 5432 5436 657 12 7609 7609 7380 797 10 0 0 0 156 1272 100 -2177 -2173 -2177 -2173 848089 -2.439 -50
100475 1 1 5 hsa-mir-211 6160 9970 150 5427 5371 517 9 7402 7402 7142 887 12 0 0 0 156 1272 100 -1975 -2031 -1975 -2031 837938 -1.997 -50
100115 1 1 6 ath-miR319 6160 10370 150 7239 7031 1040 14 7315 7315 7360 489 6 26 4 0 156 1272 100 -76 -284 -76 -284 1096833 -0.673 -50
101381 1 1 7 rno-miR-325 6160 10770 150 5578 5496 509 9 6964 6964 6851 548 7 0 0 0 156 1272 100 -1386 -1468 -1386 -1468 857411 -2.473 -50
101117 1 1 8 mmu-mir-145 6160 11170 150 6531 6134 1015 16 6846 6846 6841 318 4 9 3 0 156 1272 100 -315 -712 -315 -712 956924 -2.223 -50
100020 1 2 1 ath-miR158 6550 8370 150 4931 5122 764 14 8130 8130 7890 908 11 0 0 0 156 1272 100 -3199 -3008 -3199 -3008 799010 -3.048 -50
101286 1 2 2 mmu-mir-23b 6560 8770 150 5097 5199 675 12 8164 8164 7927 984 12 0 0 0 156 1272 100 -3067 -2965 -3067 -2965 811094 -2.772 -50
101022 1 2 3 mmu-mir-125b 6560 9170 150 5381 5364 554 10 7867 7867 7705 815 10 0 0 0 156 1272 100 -2486 -2503 -2486 -2503 836845 -2.872 -50
100752 1 2 4 miR-106a 6560 9570 150 5035 5075 645 12 7654 7654 7431 858 11 0 0 0 156 1272 100 -2619 -2579 -2619 -2579 791681 -2.746 -50
100476 1 2 5 hsa-mir-211 6560 9970 150 5213 5172 401 7 7399 7399 7084 968 13 0 0 0 156 1272 100 -2186 -2227 -2186 -2227 806757 -1.975 -50
100116 1 2 6 ath-miR319 6560 10370 150 6850 6790 523 7 7309 7309 7299 418 5 3 0 0 156 1272 100 -459 -519 -459 -519 1059232 -1.218 -50
101382 1 2 7 rno-miR-325 6560 10770 150 5359 5333 353 6 6923 6923 6786 657 9 0 0 0 156 1272 100 -1564 -1590 -1564 -1590 831916 -2.212 -50
101118 1 2 8 mmu-mir-145 6560 11170 150 6352 6433 1024 15 6790 6790 6828 567 8 17 12 0 156 1272 100 -438 -357 -438 -357 1003559 -0.697 -50
100403 1 3 1 hsa-mir-197 6950 8370 150 4640 4639 649 13 8127 8127 7692 1426 18 0 0 0 156 1272 100 -3487 -3488 -3487 -3488 723744 -2.141 -50
100043 1 3 2 ath-miR161 6960 8770 150 4836 4783 772 16 7987 7987 7776 900 11 0 0 0 156 1272 100 -3151 -3204 -3151 -3204 746164 -3.326 -50
101309 1 3 3 mmu-mir-30e 6960 9170 150 4555 4570 968 21 7792 7792 7523 1029 13 0 0 0 156 1272 100 -3237 -3222 -3237 -3222 712973 -2.87 -50
101045 1 3 4 mmu-mir-132 6960 9570 150 4832 4917 1151 23 7484 7484 7262 914 12 0 0 0 156 1272 100 -2652 -2567 -2652 -2567 766975 -2.566 -50

Total number of rows: 1536

Table truncated, full table size 203 Kbytes.




Supplementary data files not provided
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