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Sample GSM31775 Query DataSets for GSM31775
Status Public on Nov 01, 2004
Title Fig2 zero mir124a rep2
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6330 8260 150 4308 4307 938 21 5331 5331 5166 734 14 1 0 0 156 1272 100 -1023 -1024 -1023 -1024 671905 -1.17 -50
101285 1 1 2 mmu-mir-23b 6330 8650 150 3970 4200 1141 27 5340 5340 5047 1006 19 1 0 0 156 1272 100 -1370 -1140 -1370 -1140 655151 -0.842 -50
101021 1 1 3 mmu-mir-125b 6330 9050 150 4458 4547 786 17 5394 5394 5206 698 13 0 0 0 156 1272 100 -936 -847 -936 -847 709332 -0.944 -50
100751 1 1 4 miR-106a 6330 9450 150 4959 4924 725 14 5472 5472 5328 759 14 0 0 0 156 1272 100 -513 -548 -513 -548 768137 -0.532 -50
100475 1 1 5 hsa-mir-211 6330 9850 150 4885 5014 686 13 5454 5454 5453 1012 18 1 0 0 156 1272 100 -569 -440 -569 -440 782162 -0.434 -50
100115 1 1 6 ath-miR319 6330 10250 150 5697 5744 611 10 5654 5654 5646 442 7 16 5 0 156 1272 100 43 90 43 90 896022 0.222 -50
101381 1 1 7 rno-miR-325 6330 10650 150 5203 5226 642 12 5681 5681 5602 497 8 5 0 0 156 1272 100 -478 -455 -478 -455 815207 -0.757 -50
101117 1 1 8 mmu-mir-145 6330 11050 150 5325 5160 709 13 5495 5495 5458 480 8 9 0 0 156 1272 100 -170 -335 -170 -335 804894 -0.621 -50
100020 1 2 1 ath-miR158 6720 8250 150 4560 4494 1073 23 5682 5682 5512 851 15 3 1 0 156 1272 100 -1122 -1188 -1122 -1188 701028 -1.196 -50
101286 1 2 2 mmu-mir-23b 6730 8650 150 4256 4200 868 20 5639 5639 5409 882 16 0 0 0 156 1272 100 -1383 -1439 -1383 -1439 655128 -1.371 -50
101022 1 2 3 mmu-mir-125b 6730 9050 150 4649 4615 651 14 5614 5614 5529 824 14 0 0 0 156 1272 100 -965 -999 -965 -999 719865 -1.109 -50
100752 1 2 4 miR-106a 6730 9450 150 4848 4764 811 17 6047 6047 5818 841 14 0 0 0 156 1272 100 -1199 -1283 -1199 -1283 743120 -1.253 -50
100476 1 2 5 hsa-mir-211 6730 9850 150 4788 4922 728 14 5648 5648 5577 658 11 2 1 0 156 1272 100 -860 -726 -860 -726 767772 -0.995 -50
100116 1 2 6 ath-miR319 6730 10250 150 5454 5536 456 8 5777 5777 5746 433 7 11 1 0 156 1272 100 -323 -241 -323 -241 863553 -0.485 -50
101382 1 2 7 rno-miR-325 6730 10650 150 4829 5140 746 14 5889 5889 5824 510 8 6 1 0 156 1272 100 -1060 -749 -1060 -749 801803 -1.341 -50
101118 1 2 8 mmu-mir-145 6730 11050 150 4883 4997 705 14 5716 5716 5760 665 11 0 0 0 156 1272 100 -833 -719 -833 -719 779497 -1.147 -50
100403 1 3 1 hsa-mir-197 7120 8250 150 3972 4410 1284 29 5591 5591 5154 1095 21 1 0 0 156 1272 100 -1619 -1181 -1619 -1181 687910 -0.679 -50
100043 1 3 2 ath-miR161 7130 8650 150 4541 4429 961 21 5467 5467 5198 880 16 2 0 0 156 1272 100 -926 -1038 -926 -1038 690908 -0.874 -50
101309 1 3 3 mmu-mir-30e 7130 9050 150 4342 4368 961 22 5261 5261 5080 765 15 2 0 0 156 1272 100 -919 -893 -919 -893 681337 -0.931 -50
101045 1 3 4 mmu-mir-132 7130 9450 150 4594 4729 998 21 5413 5413 5249 901 17 4 1 0 156 1272 100 -819 -684 -819 -684 737797 -0.577 -50

Total number of rows: 1536

Table truncated, full table size 201 Kbytes.




Supplementary data files not provided
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