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Sample GSM31776 Query DataSets for GSM31776
Status Public on Nov 01, 2004
Title Fig5 AO FFPE rep1
Sample type RNA
 
Source name anaplastic oligodendroglioma, formalin-fixed paraffin embedded
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 6650 8240 150 1203 1200 184 1109 1076 201 26 3 0 156 1272 94 91 94 91 -50
101285 1 1 2 mmu-mir-23b 6650 8640 150 1169 1167 105 1271 1273 233 0 0 0 156 1272 -102 -104 -102 -104 -50
101021 1 1 3 mmu-mir-125b 6650 9060 150 7864 7770 703 1508 1603 319 100 100 0 245 1131 6356 6262 6356 6262 0
100751 1 1 4 miR-106a 6650 9440 150 1843 1822 148 1454 1475 160 93 69 0 156 1272 389 368 389 368 -50
100475 1 1 5 hsa-mir-211 6650 9840 150 1346 1350 92 1479 1489 160 0 0 0 156 1272 -133 -129 -133 -129 -50
100115 1 1 6 ath-miR319 6610 10270 130 2804 2853 362 1479 1468 228 100 100 0 128 890 1325 1374 1325 1374 0
101381 1 1 7 rno-miR-325 6650 10640 150 1526 1527 116 1517 1518 126 15 2 0 156 1272 9 10 9 10 -50
101117 1 1 8 mmu-mir-145 6650 11040 150 1200 1201 135 1128 1162 198 17 0 0 156 1272 72 73 72 73 -50
100020 1 2 1 ath-miR158 7050 8240 150 1069 1066 169 1135 1128 148 10 0 0 156 1272 -66 -69 -66 -69 -50
101286 1 2 2 mmu-mir-23b 7050 8640 150 1194 1191 119 1359 1363 158 0 0 0 156 1272 -165 -168 -165 -168 -50
101022 1 2 3 mmu-mir-125b 7050 9050 150 7957 7826 1049 1483 1644 482 100 100 0 250 1122 6474 6343 6474 6343 0
100752 1 2 4 miR-106a 7070 9450 190 2163 2174 167 1480 1513 188 100 97 0 188 2040 683 694 683 694 0
100476 1 2 5 hsa-mir-211 7050 9840 150 1275 1271 102 1461 1475 190 0 0 0 156 1272 -186 -190 -186 -190 -50
100116 1 2 6 ath-miR319 7020 10260 150 2807 2841 401 1580 1580 201 99 99 0 192 1181 1227 1261 1227 1261 0
101382 1 2 7 rno-miR-325 7050 10640 150 1689 1697 178 1551 1568 227 25 1 0 156 1272 138 146 138 146 -50
101118 1 2 8 mmu-mir-145 7050 11040 150 1016 1011 107 1162 1188 200 0 0 0 156 1272 -146 -151 -146 -151 -50
100403 1 3 1 hsa-mir-197 7450 8240 150 769 808 222 1118 1118 259 4 0 0 156 1272 -349 -310 -349 -310 -50
100043 1 3 2 ath-miR161 7450 8640 150 1284 1282 111 1348 1358 130 5 0 0 156 1272 -64 -66 -64 -66 -50
101309 1 3 3 mmu-mir-30e 7450 9040 150 1513 1518 144 1454 1546 348 3 0 0 156 1272 59 64 59 64 -50
101045 1 3 4 mmu-mir-132 7450 9440 150 1594 1601 228 1530 1610 300 16 1 0 156 1272 64 71 64 71 -50

Total number of rows: 1536

Table truncated, full table size 151 Kbytes.




Supplementary data files not provided
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