NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM31778 Query DataSets for GSM31778
Status Public on Nov 01, 2004
Title Fig5 AO FFPE rep3
Sample type RNA
 
Source name anaplastic oligodendroglioma, formalin-fixed paraffin embedded
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7200 8110 150 1927 1927 125 1982 2080 359 0 0 0 156 1272 -55 -55 -55 -55 -50
101285 1 1 2 mmu-mir-23b 7200 8510 150 2002 2012 185 2202 2290 401 0 0 0 156 1272 -200 -190 -200 -190 -50
101021 1 1 3 mmu-mir-125b 7240 8930 190 7017 6951 651 2257 2412 864 99 99 0 256 2088 4760 4694 4760 4694 0
100751 1 1 4 miR-106a 7240 9320 180 2496 2509 162 2305 2313 160 57 21 0 256 1924 191 204 191 204 0
100475 1 1 5 hsa-mir-211 7200 9710 150 2152 2153 160 2338 2341 172 1 0 0 156 1272 -186 -185 -186 -185 -50
100115 1 1 6 ath-miR319 7200 10110 150 2508 2524 133 2435 2447 168 26 5 0 156 1272 73 89 73 89 100
101381 1 1 7 rno-miR-325 7200 10510 150 2145 2198 225 2480 2476 173 3 1 0 156 1272 -335 -282 -335 -282 -50
101117 1 1 8 mmu-mir-145 7200 10910 150 2241 2237 132 2221 2223 154 13 1 0 156 1272 20 16 20 16 -50
100020 1 2 1 ath-miR158 7600 8110 150 1871 1874 126 1980 2008 206 2 0 0 156 1272 -109 -106 -109 -106 -50
101286 1 2 2 mmu-mir-23b 7600 8510 150 1690 1830 590 2233 2389 842 5 0 0 156 1272 -543 -403 -543 -403 -50
101022 1 2 3 mmu-mir-125b 7630 8940 180 7213 7185 458 2340 2518 896 100 100 0 256 1924 4873 4845 4873 4845 0
100752 1 2 4 miR-106a 7620 9310 170 2446 2449 195 2344 2367 159 35 13 0 208 1660 102 105 102 105 0
100476 1 2 5 hsa-mir-211 7600 9710 150 2176 2161 157 2352 2367 161 0 0 0 156 1272 -176 -191 -176 -191 -50
100116 1 2 6 ath-miR319 7600 10110 150 2548 2560 193 2462 2487 177 31 9 0 156 1272 86 98 86 98 100
101382 1 2 7 rno-miR-325 7600 10510 150 2301 2295 177 2496 2506 321 0 0 0 156 1272 -195 -201 -195 -201 -50
101118 1 2 8 mmu-mir-145 7600 10910 150 2172 2163 132 2194 2195 159 5 0 0 156 1272 -22 -31 -22 -31 -50
100403 1 3 1 hsa-mir-197 8000 8110 150 1523 1582 228 2045 2013 230 0 0 0 156 1272 -522 -463 -522 -463 -50
100043 1 3 2 ath-miR161 8000 8510 150 1949 1943 234 2161 2201 320 0 0 0 156 1272 -212 -218 -212 -218 -50
101309 1 3 3 mmu-mir-30e 8000 8910 150 2369 2339 177 2318 2344 186 15 0 0 156 1272 51 21 51 21 -50
101045 1 3 4 mmu-mir-132 8000 9310 150 2129 2123 141 2318 2324 159 0 0 0 156 1272 -189 -195 -189 -195 -50

Total number of rows: 1536

Table truncated, full table size 153 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap