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Sample GSM31779 Query DataSets for GSM31779
Status Public on Nov 01, 2004
Title Fig5 AO fresh rep1
Sample type RNA
 
Source name anaplastic oligodendroglioma, fresh tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 5, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 6780 8200 150 1826 1820 164 1679 1645 183 42 4 0 156 1272 147 141 147 141 100
101285 1 1 2 mmu-mir-23b 6780 8600 150 1563 1524 206 1582 1565 162 14 0 0 156 1272 -19 -58 -19 -58 -50
101021 1 1 3 mmu-mir-125b 6800 9020 160 10502 10567 692 1716 1818 598 100 100 0 208 1512 8786 8851 8786 8851 0
100751 1 1 4 miR-106a 6820 9420 160 2451 2450 215 1661 1707 236 99 92 0 208 1512 790 789 790 789 0
100475 1 1 5 hsa-mir-211 6780 9800 150 1510 1512 119 1545 1547 148 5 0 0 156 1272 -35 -33 -35 -33 -50
100115 1 1 6 ath-miR319 6720 10220 110 1965 1943 227 1418 1420 144 92 85 0 80 656 547 525 547 525 0
101381 1 1 7 rno-miR-325 6780 10600 150 1499 1492 146 1482 1496 140 19 3 0 156 1272 17 10 17 10 -50
101117 1 1 8 mmu-mir-145 6780 11000 150 1480 1378 496 1484 1501 137 25 14 0 156 1272 -4 -106 -4 -106 -50
100020 1 2 1 ath-miR158 7180 8200 150 2002 1991 186 1750 1751 224 55 14 0 156 1272 252 241 252 241 100
101286 1 2 2 mmu-mir-23b 7180 8600 150 1817 1981 489 1620 1603 149 57 37 0 156 1272 197 361 197 361 -50
101022 1 2 3 mmu-mir-125b 7200 9030 160 9933 10010 944 1776 2022 951 100 100 0 208 1512 8157 8234 8157 8234 0
100752 1 2 4 miR-106a 7200 9400 150 2502 2455 287 1822 1985 386 87 32 0 156 1272 680 633 680 633 100
100476 1 2 5 hsa-mir-211 7180 9800 150 1962 1931 154 1707 1715 111 78 57 0 156 1272 255 224 255 224 -50
100116 1 2 6 ath-miR319 7180 10200 150 1848 1848 202 1640 1654 143 58 33 0 156 1272 208 208 208 208 100
101382 1 2 7 rno-miR-325 7180 10600 150 1478 1487 114 1562 1571 123 5 0 0 156 1272 -84 -75 -84 -75 -50
101118 1 2 8 mmu-mir-145 7180 11000 150 1312 1224 268 1433 1436 134 0 0 0 156 1272 -121 -209 -121 -209 -50
100403 1 3 1 hsa-mir-197 7580 8200 150 1427 1455 212 1694 1670 195 3 0 0 156 1272 -267 -239 -267 -239 -50
100043 1 3 2 ath-miR161 7580 8600 150 1505 1503 114 1533 1504 175 3 0 0 156 1272 -28 -30 -28 -30 -50
101309 1 3 3 mmu-mir-30e 7580 9000 150 1693 1682 159 1626 1703 303 3 0 0 156 1272 67 56 67 56 -50
101045 1 3 4 mmu-mir-132 7580 9400 150 2404 2390 258 2150 2185 412 23 1 0 156 1272 254 240 254 240 -50

Total number of rows: 1536

Table truncated, full table size 155 Kbytes.




Supplementary data files not provided
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