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Sample GSM3179 Query DataSets for GSM3179
Status Public on Mar 16, 2003
Title GC2_LT2_log_on_4
Sample type genomic
 
Channel 1
Source name Typhimurium LT2 OD=0.4
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D454-01
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE115 LT2_log_overnight_1

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 2740 2190 423.846619 117.661766 517.102234 200.082642 191.159576 16300 57.935802 0.970562 0.989876 0.994171 2.118358 0.564895 1045.946289 228.485291 960.569702 314.697937 190.32518 18600 57.935802 0.967106 0.972748 0.991615 3.323652 0.812159 1 1 1 1 1 0 1 1 1 1 1 1 1 306.184853 817.460998 0.010420941 0.016444039 -0.1981023 1.577980169 0.633721526
2 2990 2200 421.83783 73.764709 415.819183 145.866745 191.49231 14800 49.125851 0.971252 0.985855 0.996796 2.89194 0.771184 719.384216 193.529419 618.382935 274.934052 189.822784 19000 49.125851 0.971562 0.983131 0.993477 2.61657 0.697752 1 1 1 1 1 0 1 1 1 1 1 0 1 348.073121 525.854797 0.0118466 0.010578091 0.0491863 0.892922065 1.119918568
3 3250 2200 604.055847 123.558823 550.636414 225.820053 184.895889 17900 54.933327 0.956054 0.983261 0.995056 2.674943 0.713318 1459.377441 193.897064 1014.136353 228.651337 185.239883 15100 54.933327 0.957766 0.97226 0.994576 6.382545 0.845018 1 1 1 1 1 0 1 1 1 1 1 1 1 480.497024 1265.480377 0.016353622 0.025456393 -0.1921833 1.556621107 0.642417089
4 3500 2200 370.847229 67.926468 400.780273 159.998718 188.813965 14400 54.933327 0.967454 0.986305 0.995949 2.317814 0.618084 630.81189 158.176468 838.014648 280.278656 188.813965 20200 54.933327 0.968221 0.980064 0.991013 2.25066 0.600176 1 1 1 1 1 0 1 1 1 1 1 0 1 302.920761 472.635422 0.010309849 0.00950753 0.0351853 0.922179428 1.084387668
5 3750 2210 916.12793 142.941177 1029.600952 271.489746 187.969162 17200 47.691326 0.950619 0.970436 0.992966 3.374448 0.813934 1604.505737 206.338242 1637.646484 271.373718 185.583237 17600 47.691326 0.95764 0.952972 0.992821 5.912532 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 773.186753 1398.167495 0.02631526 0.028125526 -0.0288933 1.068791518 0.935636167
6 4000 2220 493.731537 102.191177 587.621033 201.399521 190.992981 14900 41.608349 0.965301 0.976524 0.994232 2.451503 0.653734 898.732544 207.691177 1265.4823 296.846436 188.307541 17200 41.608349 0.964355 0.978905 0.991737 3.027601 0.801098 1 1 1 1 1 0 1 1 1 1 1 1 1 391.54036 691.041367 0.013325999 0.013900983 -0.0183463 1.043147477 0.958637222
7 4240 2220 306.514282 73.985291 283.592957 160.095917 190.157852 14000 33.569828 0.970646 0.991226 0.995438 1.914567 0.510551 623.337952 182.470581 619.065918 248.986038 182.12056 14500 33.569828 0.955182 0.986412 0.993317 2.503506 0.667602 1 1 1 1 1 0 1 1 1 1 1 0 1 232.528991 440.867371 0.007914079 0.008868485 -0.0494493 1.12059596 0.8923823
8 4500 2230 452.329102 95.279411 428.820465 185.01738 186.950348 15800 37.256496 0.962079 0.986046 0.995506 2.444792 0.651945 713.251343 133.691177 645.537415 211.589951 188.138428 18300 37.256496 0.955648 0.979713 0.993484 3.370913 0.813812 1 1 1 1 1 0 1 1 1 1 1 1 1 357.049691 579.560166 0.012152116 0.011658428 0.0180123 0.959374274 1.042346065
9 4750 2230 813 83.308823 792.613647 215.028381 188.138428 17000 37.256496 0.95617 0.976883 0.994324 3.780896 0.827016 1332.062866 208.102936 1241.423828 279.080322 188.138428 17500 37.256496 0.96176 0.96907 0.992966 4.773045 0.839748 1 1 1 1 1 1 1 1 1 1 1 1 1 729.691177 1123.95993 0.024834896 0.022609569 0.0407703 0.91039515 1.098424129
10 5010 2240 759.847534 68.647057 807.677612 136.894089 187.460449 16400 45.267647 0.964958 0.976593 0.996346 5.550623 0.840981 989.470581 170.529419 1091.734253 294.724121 191.990341 20400 45.267647 0.972025 0.970108 0.992218 3.357277 0.813338 1 1 1 1 1 1 1 1 1 1 1 1 1 691.200477 818.941162 0.023524873 0.016473814 0.1547333 0.70027218 1.428016175
11 5240 2250 398.939392 93.029411 576.245117 184.137192 188.645309 13200 26.406612 0.952962 0.985657 0.995445 2.166533 0.577742 724.477783 163.764709 3045.333984 250.654129 193.312149 18000 26.406612 0.97199 0.986496 0.993927 2.890348 0.77076 1 1 1 1 1 0 1 1 1 1 1 0 1 305.909981 560.713074 0.010411586 0.0112793 -0.0347653 1.083341144 0.923070268
12 5500 2250 235.876099 52.161766 220.606674 154.691757 184.723648 11300 36.078117 0.958007 0.993172 0.994843 1.524814 0.406617 390.157898 142.617645 389.923676 243.726669 189.487106 17100 36.078117 0.967552 0.987984 0.994003 1.600801 0.42688 1 1 1 1 1 0 1 1 1 1 1 0 1 183.714333 247.540253 0.006252681 0.004979518 0.0988793 0.796381187 1.255680089
13 5740 2250 297.827576 60.970589 266.279114 146.209213 187.290573 14500 26.406612 0.974367 0.992393 0.996109 2.036996 0.543199 522.268066 109.617645 431.449768 175.767151 185.754669 19400 26.406612 0.953165 0.986343 0.995743 2.971363 0.792364 1 1 1 1 1 0 1 1 1 1 1 0 1 236.856987 412.650421 0.008061381 0.008300873 -0.0127143 1.029708491 0.971148639
14 6000 2260 418.361115 80.573532 404.707275 215.839371 181.244553 14400 39.47686 0.943625 0.986633 0.994385 1.938298 0.51688 514.195557 110.132355 478.877014 183.896454 188.138428 17900 39.47686 0.959563 0.984901 0.994789 2.796115 0.745631 1 1 1 1 1 0 1 1 1 1 1 0 1 337.787583 404.063202 0.011496534 0.008128132 0.1505763 0.707007177 1.4144128
15 6250 2270 1297.105835 48.161766 1069.30188 107.65667 187.799744 17000 44.89114 0.966117 0.968933 0.996994 12.048541 0.840364 1771.645752 105.661766 1816.182251 204.74649 188.307541 22300 44.89114 0.963911 0.950478 0.993912 8.652875 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 1248.944069 1665.983986 0.042507567 0.033512921 0.1032543 0.788398945 1.268393376
16 6490 2280 425.229736 76.308823 443.911194 153.262161 189.990387 14800 45.471806 0.963894 0.988487 0.995285 2.774525 0.739873 830.425293 219.852936 669.785095 302.209747 185.411636 17400 45.471806 0.95131 0.980881 0.992905 2.747844 0.732758 1 1 1 1 1 0 1 1 1 1 1 0 1 348.920913 610.572357 0.011875455 0.012282269 -0.0146283 1.034256693 0.966877959
17 6750 2270 345.477936 136.485291 321.482117 217.828674 184.551254 13600 44.89114 0.95081 0.990891 0.994232 1.586008 0.422935 635.172241 151.558823 611.430908 266.756104 188.982483 18000 44.89114 0.96752 0.983963 0.994827 2.381097 0.634959 1 1 1 1 1 0 1 1 1 1 1 0 1 208.992645 483.613418 0.007113024 0.009728364 -0.1359863 1.367683292 0.731163425
18 7000 2270 377.805969 95.867645 338.084717 183.162674 180.54068 13400 44.89114 0.943829 0.988884 0.995644 2.06268 0.550048 682.242737 124.882355 686.163696 186.226517 190.826248 20600 44.89114 0.974496 0.979515 0.995148 3.66351 0.823431 1 1 1 1 1 0 1 1 1 1 1 1 1 281.938324 557.360382 0.009595716 0.011211857 -0.0676003 1.168423232 0.85585426
19 2750 2440 519.280029 78.970589 650.010132 153.032043 187.630173 15000 62.935513 0.962211 0.981941 0.995766 3.393276 0.814584 835.857788 147.529419 1214.755737 215.463303 192.321655 21800 62.935513 0.971849 0.975418 0.994453 3.879351 0.829913 1 1 1 1 1 1 1 1 1 1 1 1 1 440.30944 688.328369 0.014985846 0.013846408 0.0343443 0.923965754 1.082291196
20 3000 2460 916.881348 148.529419 1066.647949 614.624695 187.460449 17700 47.691326 0.965 0.971085 0.991264 1.491774 0.397806 1452.783081 1044.235352 1514.251099 6223.500977 189.319046 16600 47.691326 0.964309 0.961525 0.971291 0.233435 0.062249 1 1 1 1 1 0 1 1 1 1 1 0 1 768.351929 408.547729 0.026150707 0.008218343 0.5026993 0.314268474 3.181992731

Total number of rows: 5184

Table truncated, full table size 1778 Kbytes.




Supplementary data files not provided
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