NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM31791 Query DataSets for GSM31791
Status Public on Nov 01, 2004
Title Fig7 hsa-mir23a rep1
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7220 7730 150 925 972 120 1137 1135 75 1 0 0 156 1272 -212 -165 -212 -165 -50
101285 1 1 2 mmu-mir-23b 7230 8170 140 1671 1664 123 1116 1117 62 99 98 0 156 1140 555 548 555 548 0
101021 1 1 3 mmu-mir-125b 7220 8530 150 888 921 115 1099 1101 72 0 0 0 156 1272 -211 -178 -211 -178 -50
100751 1 1 4 miR-106a 7210 8930 150 949 952 62 1084 1083 55 0 0 0 156 1272 -135 -132 -135 -132 -50
100475 1 1 5 hsa-mir-211 7210 9330 150 849 862 95 1059 1059 70 1 0 0 156 1272 -210 -197 -210 -197 -50
100115 1 1 6 ath-miR319 7190 9750 140 2095 2068 339 1035 1039 77 99 99 0 156 1140 1060 1033 1060 1033 0
101381 1 1 7 rno-miR-325 7210 10130 150 933 938 143 1003 1009 78 1 0 0 156 1272 -70 -65 -70 -65 -50
101117 1 1 8 mmu-mir-145 7210 10530 150 820 821 73 1044 1047 59 0 0 0 156 1272 -224 -223 -224 -223 -50
100020 1 2 1 ath-miR158 7610 7730 150 920 943 96 1166 1162 76 0 0 0 156 1272 -246 -223 -246 -223 -50
101286 1 2 2 mmu-mir-23b 7630 8170 150 1738 1744 121 1148 1148 55 100 99 0 156 1272 590 596 590 596 0
101022 1 2 3 mmu-mir-125b 7610 8530 150 817 833 77 1105 1107 65 0 0 0 156 1272 -288 -272 -288 -272 -50
100752 1 2 4 miR-106a 7610 8930 150 949 953 63 1071 1074 73 0 0 0 156 1272 -122 -118 -122 -118 -50
100476 1 2 5 hsa-mir-211 7610 9330 150 830 864 101 1086 1084 64 0 0 0 156 1272 -256 -222 -256 -222 -50
100116 1 2 6 ath-miR319 7610 9760 140 2232 2236 196 1062 1064 57 100 100 0 156 1140 1170 1174 1170 1174 0
101382 1 2 7 rno-miR-325 7610 10130 150 918 921 65 1035 1032 58 0 0 0 156 1272 -117 -114 -117 -114 -50
101118 1 2 8 mmu-mir-145 7610 10530 150 825 829 55 1022 1017 72 0 0 0 156 1272 -197 -193 -197 -193 -50
100403 1 3 1 hsa-mir-197 8010 7730 150 714 785 193 1151 1150 85 2 0 0 156 1272 -437 -366 -437 -366 -50
100043 1 3 2 ath-miR161 8010 8130 150 1017 1019 55 1140 1140 76 0 0 0 156 1272 -123 -121 -123 -121 -50
101309 1 3 3 mmu-mir-30e 8010 8530 150 1013 1019 92 1087 1092 75 3 0 0 156 1272 -74 -68 -74 -68 -50
101045 1 3 4 mmu-mir-132 8010 8930 150 879 890 89 1090 1091 66 0 0 0 156 1272 -211 -200 -211 -200 -50

Total number of rows: 1536

Table truncated, full table size 147 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap