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Sample GSM31792 Query DataSets for GSM31792
Status Public on Nov 01, 2004
Title Fig7 hsa-mir23a rep2
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7270 7730 150 861 854 64 885 886 54 7 0 0 156 1272 -24 -31 -24 -31 -50
101285 1 1 2 mmu-mir-23b 7270 8130 120 1255 1253 67 859 859 57 100 100 0 120 820 396 394 396 394 0
101021 1 1 3 mmu-mir-125b 7270 8530 150 761 770 78 777 777 48 8 3 0 156 1272 -16 -7 -16 -7 -50
100751 1 1 4 miR-106a 7260 8930 150 861 861 54 800 801 50 59 21 0 156 1272 61 61 61 61 -50
100475 1 1 5 hsa-mir-211 7260 9330 150 751 763 85 767 767 51 15 3 0 156 1272 -16 -4 -16 -4 -50
100115 1 1 6 ath-miR319 7260 9730 120 1771 1775 255 752 755 50 100 100 0 120 820 1019 1023 1019 1023 0
101381 1 1 7 rno-miR-325 7260 10130 150 792 788 57 759 761 46 41 10 0 156 1272 33 29 33 29 -50
101117 1 1 8 mmu-mir-145 7260 10530 150 783 785 56 784 806 93 3 1 0 156 1272 -1 1 -1 1 -50
100020 1 2 1 ath-miR158 7660 7730 150 948 944 59 894 895 53 50 17 0 156 1272 54 50 54 50 -50
101286 1 2 2 mmu-mir-23b 7650 8140 140 1279 1285 97 838 837 65 100 100 0 156 1140 441 447 441 447 0
101022 1 2 3 mmu-mir-125b 7660 8530 150 747 744 56 756 759 54 13 0 0 156 1272 -9 -12 -9 -12 -50
100752 1 2 4 miR-106a 7660 8940 140 951 948 66 767 769 51 98 89 0 156 1140 184 181 184 181 0
100476 1 2 5 hsa-mir-211 7680 9330 90 862 875 109 795 801 59 51 13 0 52 420 67 80 67 80 0
100116 1 2 6 ath-miR319 7650 9740 140 1495 1493 204 751 753 50 100 100 0 156 1140 744 742 744 742 0
101382 1 2 7 rno-miR-325 7660 10130 150 783 778 65 728 730 49 53 16 0 156 1272 55 50 55 50 -50
101118 1 2 8 mmu-mir-145 7660 10530 150 789 793 79 728 732 53 55 22 0 156 1272 61 65 61 65 -50
100403 1 3 1 hsa-mir-197 8060 7730 150 699 761 167 963 963 67 10 2 0 156 1272 -264 -202 -264 -202 -50
100043 1 3 2 ath-miR161 8060 8130 150 949 957 92 841 843 73 72 26 0 156 1272 108 116 108 116 -50
101309 1 3 3 mmu-mir-30e 8070 8530 120 939 935 51 747 748 40 99 98 0 120 820 192 188 192 188 0
101045 1 3 4 mmu-mir-132 8060 8930 150 825 833 75 746 749 44 69 44 0 156 1272 79 87 79 87 -50

Total number of rows: 1536

Table truncated, full table size 143 Kbytes.




Supplementary data files not provided
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