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Sample GSM31800 Query DataSets for GSM31800
Status Public on Nov 01, 2004
Title Fig7 hsa-mir200b rep2
Sample type RNA
 
Source name synthetic
Organism Homo sapiens
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7200 7680 110 500 511 65 402 405 43 93 66 0 80 656 98 109 98 109 0
101285 1 1 2 mmu-mir-23b 7220 8080 100 470 481 61 392 392 31 93 66 0 80 560 78 89 78 89 0
101021 1 1 3 mmu-mir-125b 7220 8480 150 410 407 35 367 369 32 64 23 0 156 1272 43 40 43 40 -50
100751 1 1 4 miR-106a 7220 8880 150 398 401 53 321 323 34 79 58 0 156 1272 77 80 77 80 -50
100475 1 1 5 hsa-mir-211 7220 9270 150 365 367 31 360 361 31 19 5 0 156 1272 5 7 5 7 -50
100115 1 1 6 ath-miR319 7230 9680 130 677 678 80 376 382 74 100 97 0 120 940 301 302 301 302 0
101381 1 1 7 rno-miR-325 7220 10070 150 370 388 106 361 366 35 25 9 0 156 1272 9 27 9 27 -50
101117 1 1 8 mmu-mir-145 7220 10470 150 401 402 37 355 357 30 63 29 0 156 1272 46 47 46 47 -50
100020 1 2 1 ath-miR158 7620 7710 100 464 468 43 384 386 31 86 66 0 80 560 80 84 80 84 0
101286 1 2 2 mmu-mir-23b 7610 8080 150 420 420 39 375 376 29 67 38 0 156 1272 45 45 45 45 -50
101022 1 2 3 mmu-mir-125b 7620 8480 150 432 433 37 377 379 31 77 39 0 156 1272 55 56 55 56 -50
100752 1 2 4 miR-106a 7620 8880 150 402 401 45 328 332 37 82 49 0 156 1272 74 73 74 73 -50
100476 1 2 5 hsa-mir-211 7620 9280 150 363 365 40 344 344 29 39 12 0 156 1272 19 21 19 21 -50
100116 1 2 6 ath-miR319 7620 9680 140 655 653 89 359 361 30 100 98 0 156 1140 296 294 296 294 0
101382 1 2 7 rno-miR-325 7620 10080 150 376 374 36 375 379 49 4 0 0 156 1272 1 -1 1 -1 -50
101118 1 2 8 mmu-mir-145 7620 10480 150 373 372 47 343 345 30 49 16 0 156 1272 30 29 30 29 -50
100403 1 3 1 hsa-mir-197 8010 7680 150 332 341 37 380 383 39 3 0 0 156 1272 -48 -39 -48 -39 -50
100043 1 3 2 ath-miR161 8040 8090 130 459 465 50 378 380 31 91 70 0 120 940 81 87 81 87 0
101309 1 3 3 mmu-mir-30e 8000 8490 110 459 457 39 373 377 40 88 56 0 80 656 86 84 86 84 0
101045 1 3 4 mmu-mir-132 8010 8880 150 337 341 38 332 340 52 12 1 0 156 1272 5 9 5 9 -50

Total number of rows: 1536

Table truncated, full table size 141 Kbytes.




Supplementary data files not provided

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