NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM31801 Query DataSets for GSM31801
Status Public on Nov 01, 2004
Title Fig7 mmu-mir200b rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 7, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Sum of Medians sum of medians
Sum of Means sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Sum of Medians Sum of Means VALUE F532 Mean - B532 Flags
100019 1 1 1 ath-miR158 7250 7830 120 661 659 60 533 533 42 90 73 0 120 820 128 126 128 126 0
101285 1 1 2 mmu-mir-23b 7260 8220 120 652 639 61 545 546 39 85 68 0 120 820 107 94 107 94 0
101021 1 1 3 mmu-mir-125b 7240 8640 100 636 631 66 540 542 39 91 68 0 80 560 96 91 96 91 0
100751 1 1 4 miR-106a 7250 9020 130 737 734 61 542 543 38 97 95 0 120 940 195 192 195 192 0
100475 1 1 5 hsa-mir-211 7260 9430 120 663 653 51 531 531 37 95 88 0 120 820 132 122 132 122 0
100115 1 1 6 ath-miR319 7250 9840 140 881 870 148 533 544 59 96 89 0 156 1140 348 337 348 337 0
101381 1 1 7 rno-miR-325 7220 10250 150 613 612 57 525 535 55 81 34 0 156 1272 88 87 88 87 0
101117 1 1 8 mmu-mir-145 7250 10640 120 639 637 60 510 513 36 95 90 0 120 820 129 127 129 127 0
100020 1 2 1 ath-miR158 7640 7820 130 683 674 54 538 556 99 79 9 0 120 940 145 136 145 136 0
101286 1 2 2 mmu-mir-23b 7650 8220 110 631 628 44 546 547 46 76 43 0 80 656 85 82 85 82 0
101022 1 2 3 mmu-mir-125b 7660 8630 90 612 621 42 541 545 46 80 40 0 52 420 71 80 71 80 0
100752 1 2 4 miR-106a 7650 9020 140 698 711 75 519 520 34 99 98 0 156 1140 179 192 179 192 0
100476 1 2 5 hsa-mir-211 7650 9420 130 652 644 73 523 523 35 92 82 0 120 940 129 121 129 121 0
100116 1 2 6 ath-miR319 7640 9820 140 875 875 131 516 519 45 97 97 0 156 1140 359 359 359 359 0
101382 1 2 7 rno-miR-325 7630 10240 140 598 597 38 517 526 53 76 21 0 156 1140 81 80 81 80 0
101118 1 2 8 mmu-mir-145 7640 10630 140 624 613 73 514 516 36 93 79 0 156 1140 110 99 110 99 0
100403 1 3 1 hsa-mir-197 8050 7820 150 411 424 62 549 556 62 0 0 0 156 1272 -138 -125 -138 -125 -50
100043 1 3 2 ath-miR161 8050 8220 150 639 636 54 553 557 52 75 37 0 156 1272 86 83 86 83 -50
101309 1 3 3 mmu-mir-30e 8050 8640 110 654 660 42 531 535 51 97 72 0 80 656 123 129 123 129 0
101045 1 3 4 mmu-mir-132 8030 9070 90 629 630 31 524 534 49 96 57 0 52 420 105 106 105 106 0

Total number of rows: 1536

Table truncated, full table size 143 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap