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Sample GSM32279

Query DataSets for GSM32279

Status

Public on Oct 23, 2004

Title

CGH5_26, XX+XY

Sample type

genomic

Channel 1

Source name

2ng of Phi-29amplified mixture 1:1 of commercial female DNA XX (Promega) and commercial male DNA XY (Promega)

Organism

Homo sapiens

Extracted molecule

genomic DNA

Channel 2

Source name

commercial female DNA (Promega)

Organism

Homo sapiens

Extracted molecule

genomic DNA

Description

2ng of a mixture 1:1 of commercial female DNA (XX) and commercial male DNA (XY) were amplified with Phi-29 enzyme (GenomiPhi kit-Amersham) in order to simulate the amounts of a microdissected sample. Details of the experiment are available within the Nucleic Acid Research, 2004 manuscript "Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH", by Cardoso J. et al.

Submission date

Oct 14, 2004

Last update date

May 27, 2005

Contact name

Joana Cardoso

E-mail(s)

joanacardoso@fm.ul.pt

Phone

351-21-7999519

Organization name

Faculty of Medicine

Lab

Biology of Chromatin Unit

Street address

Av. Prof Egaz Moniz

City

Lisbon

ZIP/Postal code

1700

Country

Portugal

Platform ID

GPL1506

Series (1)

GSE1841

BAC CGH array profiling using Phi29-amplified microdissected samples

Data table header descriptions
ID_REF
VALUE	Log2Lowess Norm ratios, array CGH5_26, sample Phi29-amplified 1:1 mixture DNA (XX+XY) vs. non-amplified female (XX)

Data table
ID_REF	VALUE
10	0.19246087
11	-0.667106654
20	-0.017031711
21	-0.317907536
40	0.086459635
50	-0.361033626
60	0.0134184
61	-0.240113981
62	-0.212729546
70	0.029882151
71	0.123720358
72	0.139472926
80	0.05363427
90	0.477016294
91	0.348757695
92	0.494185628
100	0.107086722
101	0.176741465
102	0.082509596
110	0.342910033

Total number of rows: 3615

Table truncated, full table size 63 Kbytes.

Supplementary data files not provided