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Sample GSM323528 Query DataSets for GSM323528
Status Public on Sep 25, 2008
Title JPA284
Sample type RNA
 
Source name JPA284
Organism Homo sapiens
Characteristics Juvenile pilocytic astrocytoma
Age: 9 Sex: F
Location: posterior fossa
Histopathology: hypocellular, Ki-67(1-4%)
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using GeneArray Scanner Model G2500
Description Gene expression from juvenile pilocytic astrocytoma
Data processing The data were analyzed using GCOS1.4
 
Submission date Sep 23, 2008
Last update date Sep 26, 2008
Contact name Kwong-Kwok Wong
E-mail(s) kkwong@mdanderson.org
Phone 713-792-0229
Organization name UT M. D. Anderson Cancer Center
Department Gynecologic Oncology and Reproductive Medicine
Street address T4-3900, 1515 Holcombe Boulevard
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL96
Series (1)
GSE12907 Expression Analysis of Juvenile Pilocytic Astrocytomas by Oligonucleotide Microarray Reveals Two Potential Subgroups

Data table header descriptions
ID_REF
VALUE dChip normalization

Data table
ID_REF VALUE
1007_s_at 3171.82
1053_at 251.52
117_at 279.02
121_at 1215.46
1255_g_at 62.74
1294_at 424.53
1316_at 203.78
1320_at 194.15
1405_i_at 173.53
1431_at 69.87
1438_at 158.95
1487_at 285.64
1494_f_at 372.48
1598_g_at 1135.16
160020_at 2385.36
1729_at 391.8
1773_at 210.49
177_at 180.96
179_at 889.96
1861_at 179.52

Total number of rows: 22215

Table truncated, full table size 385 Kbytes.




Supplementary file Size Download File type/resource
GSM323528.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM323528.CHP.gz 119.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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