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GEO accession:
Sample GSM3240
Query DataSets for GSM3240
Status
Public on Dec 17, 2002
Title
AIDS-KSa
Sample type
SAGE
Anchor
NlaIII
Tag Count
45913
Tag Length
10
Source name
AIDS-KS nodular lesion
Organism
Homo sapiens
Extracted molecule
total RNA
Description
SAGE library derived from a nodular skin lesion of an AIDS-KS patient taken at autopsy (1986).
Submission date
Dec 17, 2002
Last update date
Nov 19, 2008
Contact name
Antoinette van der Kuyl
E-mail(s)
a.c.vanderkuyl@amc.uva.nl
Phone
31 20 5666778
Organization name
Academic Medical Centre, University of Amsterdam
Department
Human Retrovirology
Street address
City
Amsterdam
ZIP/Postal code
1105 AZ
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE514
AIDS-related Kaposi's sarcoma
Data table header descriptions
TAG
10 nt SAGE tag sequence
COUNT
number of times tag is found in SAGE library
TPM
tags per million
Data table
TAG
COUNT
TPM
CCACTGCACT
412
8973.49
TTCGGTTGGT
392
8537.89
CGCCGCCGGC
355
7732.01
GTGACCACGG
328
7143.95
TCCCGTACAT
287
6250.95
CGTGGGTGGG
272
5924.25
GTTGTGGTTA
258
5619.32
GGGCTGGGGT
238
5183.72
TTGGTCCTCT
214
4660.99
TAGGTTGTCT
199
4334.28
GGCTGGGGGC
191
4160.04
TCCCCTACAT
186
4051.14
GAGCAGCGCC
180
3920.46
CCCTGGGTTC
162
3528.41
AGTGCAGGGC
156
3397.73
GTGGCCACGG
147
3201.71
CCCATCGTCC
145
3158.15
TTGGTGAAGG
140
3049.25
GCATAATAGG
140
3049.25
ACGCAGGGAG
138
3005.68
Total number of rows:
16359
Table truncated, full table size
305 Kbytes
.
Supplementary data files not provided
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