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GEO accession:
Sample GSM3241
Query DataSets for GSM3241
Status
Public on Dec 17, 2002
Title
AIDS-KSb
Sample type
SAGE
Anchor
NlaIII
Tag Count
47316
Tag Length
10
Source name
AIDS-KS nodular lesion
Organism
Homo sapiens
Extracted molecule
total RNA
Description
SAGE library derived from a nodular KS lesion of an AIDS-KS patient. Sample was taken at autopsy (1986). Patient died of AIDS-KS, and received vinblastine therapy till two weeks before death.
Submission date
Dec 17, 2002
Last update date
Nov 19, 2008
Contact name
Antoinette van der Kuyl
E-mail(s)
a.c.vanderkuyl@amc.uva.nl
Phone
31 20 5666778
Organization name
Academic Medical Centre, University of Amsterdam
Department
Human Retrovirology
Street address
City
Amsterdam
ZIP/Postal code
1105 AZ
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE514
AIDS-related Kaposi's sarcoma
Data table header descriptions
TAG
10 nt SAGE tag sequence
COUNT
number of times tag is found in SAGE library
TPM
tags per million
Data table
TAG
COUNT
TPM
GTGACCACGG
779
16463.78
TTGGTCCTCT
393
8305.86
CGCCGCCGGC
376
7946.57
CCACTGCACT
342
7228.00
TTCGGTTGGT
273
5769.72
GTTGTGGTTA
260
5494.97
GCCGTGTCCG
258
5452.70
GCAGCCATCC
238
5030.01
CCCTGGGTTC
231
4882.07
GGGCTGGGGT
216
4565.05
ACGCAGGGAG
206
4353.71
TGTGTTGAGA
199
4205.77
CCCGTCCGGA
196
4142.36
GATCAGGCCA
184
3888.75
GTGCGCTGAG
182
3846.48
TAGGTTGTCT
177
3740.81
GACCGCAGGA
175
3698.54
CACAAACGGT
165
3487.19
CCAGAACAGA
160
3381.52
CGCTGGTTCC
150
3170.17
Total number of rows:
16881
Table truncated, full table size
315 Kbytes
.
Supplementary data files not provided
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