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GEO accession:
Sample GSM3244
Query DataSets for GSM3244
Status
Public on Dec 17, 2002
Title
KS-48
Sample type
SAGE
Anchor
NlaIII
Tag Count
45770
Tag Length
10
Source name
AIDS-KS lesion
Organism
Homo sapiens
Extracted molecule
total RNA
Description
SAGE library generated grom a KS lesion from an AIDS-KS patient. Biopsy was taken 48 hours after chemotherapy with adriamycine, bleomycine, and vincristine.
Submission date
Dec 17, 2002
Last update date
Nov 19, 2008
Contact name
Antoinette van der Kuyl
E-mail(s)
a.c.vanderkuyl@amc.uva.nl
Phone
31 20 5666778
Organization name
Academic Medical Centre, University of Amsterdam
Department
Human Retrovirology
Street address
City
Amsterdam
ZIP/Postal code
1105 AZ
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE514
AIDS-related Kaposi's sarcoma
Data table header descriptions
TAG
10 nt SAGE tag sequence
COUNT
number of times tag is found in SAGE library
TPM
tags per million
Data table
TAG
COUNT
TPM
GTGACCACGG
701
15315.71
CCACTGCACT
649
14179.59
CAAGCATCCC
406
8870.44
CCTGTAATCC
382
8346.08
GTTGTGGTTA
329
7188.11
CTAAGACTTC
321
7013.33
GTGAAACCCC
292
6379.72
TTGGCCAGGC
224
4894.04
ACGCAGGGAG
221
4828.49
AACCCGGGAG
194
4238.58
CTCATAAGGA
178
3889.01
GTGAAACCCT
172
3757.92
CACCTAATTG
163
3561.28
TGGCGTACGG
160
3495.74
CGCCGACGAT
146
3189.86
CCCATCGTCC
138
3015.08
CCATTGCACT
133
2905.83
AGGTCAGGAG
132
2883.99
GTTCACATTA
130
2840.29
TAGGTTGTCT
123
2687.35
Total number of rows:
21482
Table truncated, full table size
400 Kbytes
.
Supplementary data files not provided
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