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Sample GSM325479 Query DataSets for GSM325479
Status Public on Oct 01, 2008
Title skeletal muscle
Sample type SRA
Source name Human skeletal muscle tissue
Organism Homo sapiens
Characteristics individual human skeletal muscle
Extracted molecule total RNA
Extraction protocol mRNA is purified from total RNA with oligo-dT magnetic beads. cDNA is synthesized with random primer priming. ds-cDNA is sequenced using Illumina Genome Analyzers as recommended by the manufacturer.
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
Description RNA_seq
Data processing not applicable

realign.txt column headers (7) and header descriptions:
Column I: tag sequence
Column II: alignment score, for 32 bp, 16000 = perfect match, 14593 = 1bp mismatch, 13906 = 2bp mismatch
Column III: # of hit in the genome, 1 = unique hit
Column IV: Chr position
Column V: Chr direction
Column VI: matched genome sequence
Column VII: next best possible alignment score
Submission date Sep 30, 2008
Last update date May 15, 2019
Contact name Shujun Luo
Organization name Illumina inc
Street address 25861 Industrial Blvd
City Hayward
State/province CA
ZIP/Postal code 94545
Country USA
Platform ID GPL9052
Series (1)
GSE12946 Alternative Isoform Regulation in Human Tissue Transcriptomes
SRA SRX003930
BioSample SAMN02195684

Supplementary file Size Download File type/resource
GSM325479_skelMuscle_HCT171_hg18realign.txt.gz 469.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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