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Sample GSM325563 Query DataSets for GSM325563
Status Public on Oct 02, 2008
Title Hyperdip>50-SNP-#12
Sample type RNA
 
Source name Diagnostic_acute_leukemia
Organism Homo sapiens
Characteristics B-progenitor ALL with high hyperdiploidy (>50 chromosomes)
Growth protocol Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol As per manufacturer (Affymetrix)
Scan protocol As per manufacturer (Affymetrix)
Description Hyperdip>50-SNP-#12
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Sep 30, 2008
Last update date Oct 01, 2008
Contact name Guangchun Song
Phone 901-595-5722
Organization name St Jude Children's Research Hospital
Department Pathology
Lab Klco
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL96
Series (1)
GSE12995 Expression data for diagnosis acute lymphoblastic leukemia samples

Data table header descriptions
ID_REF
VALUE MAS5 signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 708.8
AFFX-BioB-M_at 1677
AFFX-BioB-3_at 712.8
AFFX-BioC-5_at 2467.9
AFFX-BioC-3_at 1799.5
AFFX-BioDn-5_at 2069
AFFX-BioDn-3_at 12206
AFFX-CreX-5_at 23343.1
AFFX-CreX-3_at 32885.1
AFFX-DapX-5_at 27.8
AFFX-DapX-M_at 94.9
AFFX-DapX-3_at 13.5
AFFX-LysX-5_at 7.3
AFFX-LysX-M_at 84.1
AFFX-LysX-3_at 48.1
AFFX-PheX-5_at 3
AFFX-PheX-M_at 13.7
AFFX-PheX-3_at 109
AFFX-ThrX-5_at 14.9
AFFX-ThrX-M_at 4.5

Total number of rows: 22283

Table truncated, full table size 359 Kbytes.




Supplementary file Size Download File type/resource
GSM325563.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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