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Sample GSM326356 Query DataSets for GSM326356
Status Public on Aug 01, 2011
Title Genotype 5×8 grown at 25°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 5X8, 25°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 5×8-25
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019041
BioSample SAMN00011145

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
TGGCTGCCCTTGAGAA 63925
ATAGGAGAAGTTACGC 56545
CCCTGCAGTGGCAGCC 47764
ATTTTTGATTTTGAAA 43263
ACCATAGAGACTTGTT 32476
TTTGGGAGAGGGCGTA 32356
GTCGTAGTGGAAAAGT 31313
AACATTGTGTGGACGG 29873
AAAAAAAAAAAAAAAA 27324
TCCCCGACTCCGTTGA 26516
TAGGTTTTCTATTTCT 26429
ACAATCTTGAGCGAAT 25085
AGAACTTCACTGTGTT 22428
AGTGCTGGAGAGCCCA 21746
AACAGTCTTAACGGTT 21148
ACCCGTCTGAGGAGGG 18852
CGACGCGACTACCTGC 18415
CGCCGACACTGGGGAG 18329
AATTGATGATAGCAGC 18280
GTTTTGAACGTCATCA 17045

Total number of rows: 243559

Table truncated, full table size 4553 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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