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Sample GSM3271 Query DataSets for GSM3271
Status Public on Apr 03, 2003
Title somatic embryos 28_3
Sample type RNA
 
Channel 1
Source name 28-d adaxial
Organism Glycine max
Extracted molecule total RNA
 
Channel 2
Source name 28-d abaxial
Organism Glycine max
Extracted molecule total RNA
 
 
Description Comparison of adaxial and abaxial sides of
4-6 mm cotyledons after 28 days on
40mg/L 2,4-D (replicate 3).
Scanned with ScanArray 3000.
Quantitated with GenePix 3.0.
Keywords = somatic embryogenesis
Lot batch = 0012_B10
 
Submission date Dec 21, 2002
Last update date May 27, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL229
Series (1)
GSE136 Somatic embryogenesis

Data table header descriptions
ID_REF
F_Pixels number of pixels in the spot
B_Pixels number of pixels in the background
F635Mean channel 2 mean spot intensity
F635SD standard deviation around channel 2 mean spot intensity
B635Median channel 2 median background intensity
B635SD standard deviation around channel 2 mean background intensity
F532Mean channel 1 mean spot intensity
F532SD standard deviation around channel 1 mean spot intensity
B532Median channel 1 median background intensity
B532SD standard deviation around channel 1 mean background intensity
S635N channel 2 normalized and background-corrected spot signal
S532N channel 1 normalized and background-corrected spot signal
VALUE log ratio of PRE_VALUE
Flags user-defined flags (default = 0)
PRE_VALUE S532N/S635N

Data table
ID_REF F_Pixels B_Pixels F635Mean F635SD B635Median B635SD F532Mean F532SD B532Median B532SD S635N S532N VALUE Flags PRE_VALUE
1 156 1105 17239 8084 2743 1018 43299 19238 683 1869 15399 35250 0.3596673 0 2.289109682
2 156 1024 17213 7120 2623 1043 42702 18913 679 1936 15499 34760 0.3507763 0 2.242725337
3 156 1008 4974 1880 2522 957 3973 2151 670 534 2604 2731 0.0206813 0 1.048771121
4 156 1047 5485 2039 2589 922 4153 2316 668 577 3075 2882 -0.0281513 0 0.937235772
5 156 969 7697 3280 2675 938 6837 3662 675 455 5334 5096 -0.0198243 0 0.955380577
6 156 991 7155 2924 2837 1231 6322 3915 694 862 4586 4654 0.0063923 0 1.014827737
7 208 1107 4633 1424 2678 1369 2561 1207 665 810 2076 1568 -0.1218813 0 0.755298651
8 156 931 4738 1476 2553 1146 2890 1260 631 456 2320 1867 -0.0943443 0 0.804741379
9 208 1126 4282 1426 2543 890 2319 1347 634 519 1847 1393 -0.1225163 0 0.754195994
10 156 956 4538 1702 2540 882 2819 1729 618 526 2122 1820 -0.0666743 0 0.857681433
11 156 937 7139 2882 2482 957 5026 2877 608 521 4946 3653 -0.1316043 0 0.738576628
12 208 1088 6820 3116 2445 975 5129 2791 599 499 4647 3746 -0.0936053 0 0.80611147
13 156 956 5518 2556 2396 1053 3933 2490 587 510 3316 2767 -0.0786053 0 0.834439083
14 156 942 6839 2678 2350 1023 4960 2622 605 520 4768 3601 -0.1219133 0 0.755243289
15 208 1144 2803 1071 2250 947 1152 704 566 428 586 484 -0.0830523 5 0.825938567
16 208 1306 2801 965 2187 871 1299 845 551 420 651 618 -0.0225933 5 0.949308756
17 52 385 4580 1175 2933 878 1899 847 785 568 1749 920 -0.2790023 0 0.526014866
18 156 890 5093 1723 2553 988 4440 1644 672 566 2698 3116 0.0625563 0 1.154929577
19 156 905 11167 2245 2544 948 11165 3349 643 463 9160 8703 -0.0222263 0 0.95010917
20 120 737 7241 1971 2569 993 8064 2527 660 583 4962 6124 0.0913783 0 1.234179766

Total number of rows: 9728

Table truncated, full table size 812 Kbytes.




Supplementary data files not provided
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