|
| Status |
Public on Jul 14, 2020 |
| Title |
Barrow May 2014 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Under ice marine sediment
|
| Organism |
marine sediment metagenome |
| Characteristics |
sample type: environmental
gps: N71.36 W156.52
|
| Treatment protocol |
Stored in sterile polypropylene tubes in the dark at -80C until DNA extraction
|
| Growth protocol |
Sampled directly from environment
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
MoBio Power Soil kit
|
| Label |
Cy3
|
| Label protocol |
The biological sample was labeled with Cy3 and a common oligo nucleotide reference standard (CORS) target was labeled with Cy5.
|
| |
|
| Channel 2 |
| Source name |
common oligo nucleotide reference standard
|
| Organism |
synthetic construct |
| Characteristics |
reference: common oligo nucleotide reference standard
|
| Treatment protocol |
Stored in sterile polypropylene tubes in the dark at -80C until DNA extraction
|
| Growth protocol |
Sampled directly from environment
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
MoBio Power Soil kit
|
| Label |
Cy5
|
| Label protocol |
The biological sample was labeled with Cy3 and a common oligo nucleotide reference standard (CORS) target was labeled with Cy5.
|
| |
|
| |
| Hybridization protocol |
See GeoChip protocol
|
| Scan protocol |
See GeoChip protocol
|
| Description |
B13
|
| Data processing |
The CORS is used to normalize the sample signal across the array and between arrays.
|
| |
|
| Submission date |
Jul 29, 2018 |
| Last update date |
Jul 14, 2020 |
| Contact name |
Brandon T Hassett |
| E-mail(s) |
brandon.hassett1@gmail.com
|
| Organization name |
University of Tromso
|
| Department |
Arctic and Marine Biology
|
| Street address |
Framstredet
|
| City |
Tromso |
| ZIP/Postal code |
9019 |
| Country |
Norway |
| |
|
| Platform ID |
GPL25397 |
| Series (1) |
| GSE117831 |
Survey functional genes in Arctic marine sediment communities |
|
