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Sample GSM3371577 Query DataSets for GSM3371577
Status Public on Jul 23, 2019
Title tcp14_24h_3
Sample type SRA
Source name tcp14_24h_3
Organism Arabidopsis thaliana
Characteristics genotype: tcp14 mutant
developmental stage: boyes: 3,boyes 2
tissue: seed
treatment: Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25C
Treatment protocol Name:imbibition in water - imbibition in water ,induction - water,water:time 24hour . Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25°C.
Growth protocol Media=soil Temperature=21°C Light=100 microE m2 s-1
Extracted molecule total RNA
Extraction protocol tcp14_24h_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Genome_build: transcriptome of TAIR10
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads
Submission date Aug 31, 2018
Last update date Jul 23, 2019
Contact name Véronique BRUNAUD
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
Platform ID GPL19580
Series (1)
GSE119344 RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation
BioSample SAMN09942129
SRA SRX4630550

Supplementary file Size Download File type/resource
GSM3371577_samcount_tcp14_24h_3.txt.gz 242.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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