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Sample GSM33749 Query DataSets for GSM33749
Status Public on Oct 28, 2004
Title HCC001_Cy5
Sample type RNA
 
Channel 1
Source name HCC001
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44070

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC001
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.666 0.630 1 1 1 518 244 213 313 990 286 325 403 0
1174364_1 0.804 1.746 1 1 2 11457 2910 206 244 9170 2877 315 148 0
1175152_1 -0.407 0.754 1 1 3 549 249 211 173 911 292 295 230 0
1175940_1 0.341 1.267 1 1 4 940 363 218 299 1089 374 306 216 0
1176716_1 0.720 1.647 1 1 5 1487 508 231 445 1368 365 320 189 0
1177504_1 0.064 1.045 1 1 6 1015 327 227 395 1355 405 319 205 0
1178580_1 0.857 1.811 1 1 7 3902 1041 217 398 3114 863 318 217 0
1179356_1 -1.476 0.359 1 1 8 399 197 201 179 1066 335 309 170 0
1180144_1 0.916 1.887 1 1 9 1330 570 211 364 1139 379 324 196 0
1180932_1 -0.971 0.510 1 1 10 387 171 227 198 754 244 323 366 0
1181708_1 0.048 1.034 1 1 11 648 317 222 409 887 260 321 340 0
1182496_1 0.109 1.078 1 1 12 469 836 203 430 665 222 326 390 0
1183572_1 1.025 2.036 1 1 13 1476 519 196 327 1184 303 320 259 0
1184348_1 0.704 1.629 1 1 14 757 439 202 325 797 247 329 132 0
1185136_1 0.662 1.582 1 1 15 412 541 222 280 509 295 344 197 -50
1185924_1 -0.510 0.702 1 1 16 399 186 193 189 731 210 328 188 0
1186700_1 -0.625 0.648 1 1 17 427 205 201 301 807 272 328 243 0
1187488_1 1.378 2.598 1 1 18 911 852 217 300 684 195 317 137 0
1188564_1 -0.332 0.795 1 1 19 261 206 213 224 393 266 310 161 -50
1189340_1 0.580 1.495 1 1 20 1039 404 198 318 1089 328 316 159 0

Total number of rows: 21794

Table truncated, full table size 1399 Kbytes.




Supplementary data files not provided

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