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Sample GSM341493 Query DataSets for GSM341493
Status Public on Apr 09, 2010
Title E. coli 8624 sidA deletion mutant
Sample type RNA
 
Source name E. coli 8624 sdiA deletion mutant
Organism Escherichia coli
Characteristics Escherichia coli 8624 sdiA deletion mutant grown in DMEM
Extracted molecule total RNA
Extraction protocol Ambion RiboPure RNA Isolation
Label biotin
Label protocol All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
 
Hybridization protocol All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Scan protocol All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Description All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Data processing Data has not been processed other than those protocols within GCOSv1.4
 
Submission date Nov 11, 2008
Last update date Apr 09, 2010
Contact name David A Rasko
E-mail(s) drasko@som.umaryland.edu
Phone 410 706 6774
Organization name University of Maryland School of Medicine
Department Istitute for Genome Sciences/Microbiology and Immunology
Street address 801 W. Baltimore Street, Room 619
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
 
Platform ID GPL3154
Series (1)
GSE13562 Effects of sidA and AHL on EHEC virulence

Data table header descriptions
ID_REF
VALUE MAS 5.0 Signal
ABS_CALL Call
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2011.88 P 5.16732e-05
AFFX-BioB-M_at 3353.2 P 4.42873e-05
AFFX-BioB-3_at 2109.66 P 0.000224668
AFFX-BioC-5_at 3224.54 P 4.42873e-05
AFFX-BioC-3_at 2285.31 P 4.42873e-05
AFFX-BioDn-5_at 5456.27 P 4.42873e-05
AFFX-BioDn-3_at 9809.09 P 6.02111e-05
AFFX-CreX-5_at 18257.1 P 5.16732e-05
AFFX-CreX-3_at 18396.3 P 4.42873e-05
AFFX-DapX-5_at 754.245 P 4.42873e-05
AFFX-DapX-M_at 646.716 P 0.00010954
AFFX-DapX-3_at 552.114 P 4.42873e-05
AFFX-LysX-5_at 77.1615 P 0.000581214
AFFX-LysX-M_at 46.1455 P 0.00762003
AFFX-LysX-3_at 62.5075 P 0.00401721
AFFX-PheX-5_at 318.564 P 0.000195116
AFFX-PheX-M_at 147.303 P 0.00110197
AFFX-PheX-3_at 85.4769 P 0.0113844
AFFX-ThrX-5_at 406.185 P 4.42873e-05
AFFX-ThrX-M_at 239.936 P 0.000258358

Total number of rows: 10208

Table truncated, full table size 324 Kbytes.




Supplementary file Size Download File type/resource
GSM341493.CEL.gz 1.5 Mb (ftp)(http) CEL
GSM341493.CHP.gz 2.6 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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