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GEO accession:
Sample GSM341493
Query DataSets for GSM341493
Status
Public on Apr 09, 2010
Title
E. coli 8624 sidA deletion mutant
Sample type
RNA
Source name
E. coli 8624 sdiA deletion mutant
Organism
Escherichia coli
Characteristics
Escherichia coli 8624 sdiA deletion mutant grown in DMEM
Extracted molecule
total RNA
Extraction protocol
Ambion RiboPure RNA Isolation
Label
biotin
Label protocol
All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Hybridization protocol
All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Scan protocol
All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Description
All protocols were done according to manufacturer's specifications:
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Data processing
Data has not been processed other than those protocols within GCOSv1.4
Submission date
Nov 11, 2008
Last update date
Apr 09, 2010
Contact name
David A Rasko
E-mail(s)
drasko@som.umaryland.edu
Phone
410 706 6774
Organization name
University of Maryland School of Medicine
Department
Istitute for Genome Sciences/Microbiology and Immunology
Street address
801 W. Baltimore Street, Room 619
City
Baltimore
State/province
MD
ZIP/Postal code
21201
Country
USA
Platform ID
GPL3154
Series (1)
GSE13562
Effects of sidA and AHL on EHEC virulence
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Signal
ABS_CALL
Call
DETECTION P-VALUE
p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2011.88
P
5.16732e-05
AFFX-BioB-M_at
3353.2
P
4.42873e-05
AFFX-BioB-3_at
2109.66
P
0.000224668
AFFX-BioC-5_at
3224.54
P
4.42873e-05
AFFX-BioC-3_at
2285.31
P
4.42873e-05
AFFX-BioDn-5_at
5456.27
P
4.42873e-05
AFFX-BioDn-3_at
9809.09
P
6.02111e-05
AFFX-CreX-5_at
18257.1
P
5.16732e-05
AFFX-CreX-3_at
18396.3
P
4.42873e-05
AFFX-DapX-5_at
754.245
P
4.42873e-05
AFFX-DapX-M_at
646.716
P
0.00010954
AFFX-DapX-3_at
552.114
P
4.42873e-05
AFFX-LysX-5_at
77.1615
P
0.000581214
AFFX-LysX-M_at
46.1455
P
0.00762003
AFFX-LysX-3_at
62.5075
P
0.00401721
AFFX-PheX-5_at
318.564
P
0.000195116
AFFX-PheX-M_at
147.303
P
0.00110197
AFFX-PheX-3_at
85.4769
P
0.0113844
AFFX-ThrX-5_at
406.185
P
4.42873e-05
AFFX-ThrX-M_at
239.936
P
0.000258358
Total number of rows:
10208
Table truncated, full table size
324 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM341493.CEL.gz
1.5 Mb
(ftp)
(http)
CEL
GSM341493.CHP.gz
2.6 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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