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Sample GSM348310 Query DataSets for GSM348310
Status Public on Mar 06, 2009
Title Gorilla_Human_Makari_NA15510
Sample type genomic
 
Channel 1
Source name Gorilla_Makari
Organism Gorilla gorilla
Characteristics DNA from Gorilla Makari
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 07, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_148605CB06081_532
REF_148605CB06081_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_148605CB06081_532 REF_148605CB06081_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.404 8.731 0.672 9.103 9.245 -0.142
CHR10FS100175700 10.867 11.085 -0.218 10.879 11.127 -0.248
CHR10FS100176100 10.656 11.033 -0.377 10.643 11.081 -0.438
CHR10FS100176907 10.329 10.153 0.175 10.264 10.327 -0.063
CHR10FS100177007 9.809 9.180 0.629 9.635 9.562 0.073
CHR10FS100177807 11.668 11.209 0.458 11.755 11.237 0.518
CHR10FS100178207 10.293 9.589 0.704 10.222 9.876 0.346
CHR10FS100178507 10.590 9.912 0.678 10.566 10.130 0.436
CHR10FS100179107 9.950 9.106 0.844 9.810 9.508 0.302
CHR10FS100179807 10.332 9.668 0.664 10.268 9.937 0.331
CHR10FS100180100 10.479 10.882 -0.403 10.441 10.948 -0.507
CHR10FS100180700 10.837 9.925 0.912 10.845 10.141 0.703
CHR10FS100181200 10.681 10.226 0.455 10.672 10.388 0.284
CHR10FS100182000 10.612 10.348 0.263 10.591 10.490 0.101
CHR10FS100182500 11.551 11.445 0.106 11.627 11.445 0.183
CHR10FS100183100 11.646 11.362 0.284 11.731 11.371 0.360
CHR10FS100183308 12.562 12.146 0.416 12.704 12.081 0.623
CHR10FS100183708 10.374 9.696 0.677 10.317 9.959 0.358
CHR10FS100184308 11.090 11.251 -0.161 11.128 11.274 -0.146
CHR10FS100185008 11.875 11.716 0.160 11.978 11.687 0.291

Total number of rows: 385283

Table truncated, full table size 21369 Kbytes.




Supplementary file Size Download File type/resource
GSM348310_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348310_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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