NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3484898 Query DataSets for GSM3484898
Status Public on Nov 21, 2018
Title Sae2 S bead control
Sample type SRA
 
Source name TP3352 MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 sae2::KMX
Organism Saccharomyces cerevisiae
Characteristics immunoprecipitation: bead control
phase: S
genotype/variation: TP3352 MATa his3delta1 leu2delta0 met15delta0 ura3delta0 sae2::KMX
treatment: none
Treatment protocol see growth protocol
Growth protocol alpha factor synchronization then either held in G1 or released into growth for 50 min., with or without camptothecin (100 uM)
Extracted molecule genomic DNA
Extraction protocol see BioRxiv https://doi.org/10.1101/394924
NEBNext DNA Library prep kit for Illumina (E6040S)
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina NextSeq 500
 
Description Lib 44
Data processing alignment with BWA-MEM
duplicatemarking:PicardMarkDuplicates
QC:samtoolsflagstat,idxstats
Peakcalling:macs2
Genome_build: saccer3
Supplementary_files_format_and_content: bam files
 
Submission date Nov 20, 2018
Last update date Nov 21, 2018
Contact name Tanya T. Paull
E-mail(s) tpaull@utexas.edu
Phone 5122327803
Organization name Univ. of Texas at Austin
Department Molecular Biosciences
Lab Paull
Street address 2500 Speedway MBB 2.448
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
 
Platform ID GPL19756
Series (1)
GSE122782 Flag-Sae2 ChIP seq in yeast
Relations
BioSample SAMN10457066
SRA SRX5041901

Supplementary file Size Download File type/resource
GSM3484898_Lib-44_S44_peaks_summits.bed.gz 939 b (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap