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Sample GSM35 Query DataSets for GSM35
Status Public on Jan 24, 2001
Title NHGRI_UACC-1273
Sample type RNA
 
Channel 1
Source name melanoma, lymph node
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: axillary lymph node
Patient sex: male
Patient age: 50
Passage number: 16
p16 mutation status: mutation
Invasive ability: 2.5 +/- 0.3%
Vasculogenic mimicry: -
Gel contraction: -
Cell motility: ND
Scratch wound (%): 13

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date Jan 07, 2019
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 50 261 68 279 4987896 28155.6 17198.6 171 1534.2 376.1 50 261 68 279 5454401 31141.5 20554.2 176 1325.1 268.6 176 0.904 -0.0614803 99.000 0.464 2.339 1.042 0.197 0.868
2 663 269 681 287 445413 1282.1 562.9 109 1610.2 301.1 663 269 681 287 547738 2295.3 876.2 158 1261.4 205.0 162 0.559 -0.2708353 99.000 0.464 2.339 1.042 0.197 0.536
3 86 261 104 279 342690 2502.2 1627.2 73 1529.4 343.0 86 261 104 279 337785 2600.6 1881.5 86 1373.3 247.6 93 0.962 -0.0343283 99.000 0.464 2.339 1.042 0.197 0.924
4 699 269 717 287 1185413 5439.7 1180.5 163 1832.7 395.1 699 269 717 287 976941 4556.6 1112.9 167 1436.9 312.6 171 1.194 0.0591853 99.000 0.464 2.339 1.042 0.197 1.146
5 122 261 140 279 868272 6814.0 3516.2 110 1455.2 299.8 122 261 140 279 688822 5312.4 3045.4 102 1247.8 206.8 113 1.283 0.0902583 99.000 0.464 2.339 1.042 0.197 1.231
6 736 269 754 287 10342690 45117.9 13808.2 222 2764.9 1216.8 736 269 754 287 11730590 51751.4 14152.5 223 2556.9 1287.8 224 0.872 -0.0772753 99.000 0.464 2.339 1.042 0.197 0.837
7 159 261 177 279 1480049 10353.7 5106.3 123 1582.1 341.2 159 261 177 279 1096765 7523.7 3765.3 126 1321.2 214.0 132 1.376 0.1209033 99.000 0.464 2.339 1.042 0.197 1.321
8 772 269 790 287 6791372 29560.2 9526.0 215 2474.5 897.0 772 269 790 287 7318812 32387.9 12079.8 218 2134.8 743.4 220 0.913 -0.0574963 99.000 0.464 2.339 1.042 0.197 0.876
9 195 261 213 279 1359685 11169.5 4549.1 111 1657.7 375.4 195 261 213 279 897253 6978.5 2887.2 109 1486.2 278.0 114 1.601 0.1866743 99.000 0.464 2.339 1.042 0.197 1.537
10 809 269 827 287 2167765 11631.9 5732.9 164 2001.9 372.5 809 269 827 287 1531927 8000.2 4851.0 135 1634.5 342.7 167 1.454 0.1448853 99.000 0.464 2.339 1.042 0.197 1.396
11 231 261 249 279 3151900 17849.0 9082.8 165 1850.4 427.0 231 261 249 279 3178969 18292.7 10000.3 165 1575.9 294.3 168 0.976 -0.0282603 99.000 0.464 2.339 1.042 0.197 0.937
12 845 269 863 287 702780 13855.8 6827.4 52 2116.4 434.4 845 269 863 287 618878 12370.1 7194.1 46 1695.3 352.2 52 1.120 0.0314083 99.000 0.464 2.339 1.042 0.197 1.075
13 54 881 72 899 1002102 6857.1 1968.6 128 1290.1 261.2 54 881 72 899 792556 5272.1 1749.0 124 1171.5 199.8 131 1.301 0.0965623 99.000 0.464 2.339 1.042 0.197 1.249
14 655 877 673 895 3668462 27543.6 12494.3 133 1804.1 402.9 655 877 673 895 2614558 19627.0 9482.0 132 1289.5 234.2 133 1.403 0.1293683 99.000 0.464 2.339 1.042 0.197 1.347
15 90 881 108 899 3921783 25705.9 11710.2 152 1528.7 310.8 90 881 108 899 2186205 13908.3 6972.9 140 1273.7 205.7 152 1.848 0.2489543 99.000 0.464 2.339 1.042 0.197 1.774
16 691 877 709 895 899957 7445.9 2272.1 101 1737.4 328.5 691 877 709 895 674953 5596.1 1846.8 102 1291.2 215.3 106 1.331 0.1061913 99.000 0.464 2.339 1.042 0.197 1.277
17 127 881 145 899 1997840 13533.2 6315.2 140 1488.1 298.4 127 881 145 899 1380448 9116.3 4733.8 131 1263.0 198.0 141 1.485 0.1538153 99.000 0.464 2.339 1.042 0.197 1.425
18 728 877 746 895 954027 7269.6 3456.7 109 1730.7 310.0 728 877 746 895 983822 7944.6 3333.9 111 1336.7 222.0 114 0.915 -0.0565053 99.000 0.464 2.339 1.042 0.197 0.878
19 164 881 182 899 1032215 7208.6 2817.5 120 1767.2 414.5 164 881 182 899 1036398 7434.5 2896.3 115 1577.7 319.9 123 0.970 -0.0310503 99.000 0.464 2.339 1.042 0.197 0.931
20 764 877 782 895 930876 7623.8 3798.3 97 1779.0 333.6 764 877 782 895 822639 6945.2 3467.4 101 1364.3 251.8 107 1.098 0.0228413 99.000 0.464 2.339 1.042 0.197 1.054

Total number of rows: 8192

Table truncated, full table size 1350 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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