|
| Status |
Public on May 17, 2019 |
| Title |
Heart-Vehicle |
| Sample type |
SRA |
| |
|
| Source name |
heart from aged mdx mice treated with vehicle
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
genotype: mdx
tissue: Heart
age: 11-12 months
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted form tissue using the Qiagen Rneasy mini kit
library was constructed using the Kapa strand mRNA library kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Description |
TMM_normalized_CPM.txt
|
| Data processing |
Bowtie was used fo the alignment and RSEM was used for the gene counting. TMM method in the edgeR package was used for the gene expression normalization
Genome_build: mm10
Supplementary_files_format_and_content: normalized abundance measurements
|
| |
|
| Submission date |
Dec 18, 2018 |
| Last update date |
May 17, 2019 |
| Contact name |
Xiangming Ding |
| Organization name |
UCLA
|
| Street address |
650 Charles E Young Dr S, Los Angeles, CA 90095
|
| City |
Los angeles |
| State/province |
CA |
| ZIP/Postal code |
91436 |
| Country |
USA |
| |
|
| Platform ID |
GPL21493 |
| Series (1) |
| GSE124068 |
Transcriptome analysis of mdx hearts and skeletal muscles treated with cardiac progenitor cells and their exosomes |
|
| Relations |
| BioSample |
SAMN10612580 |
| SRA |
SRX5161793 |
