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Sample GSM3520003 Query DataSets for GSM3520003
Status Public on May 17, 2019
Title Soleus-Vehicle
Sample type SRA
Source name Soleus from aged mdx mice treated with vehicle
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: mdx
tissue: Soleus
age: 11-12 months
Extracted molecule total RNA
Extraction protocol RNA was extracted form tissue using the Qiagen Rneasy mini kit
library was constructed using the Kapa strand mRNA library kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description TMM_normalized_CPM.txt
Data processing Bowtie was used fo the alignment and RSEM was used for the gene counting. TMM method in the edgeR package was used for the gene expression normalization
Genome_build: mm10
Supplementary_files_format_and_content: normalized abundance measurements
Submission date Dec 18, 2018
Last update date May 17, 2019
Contact name Xiangming Ding
Organization name UCLA
Street address 650 Charles E Young Dr S, Los Angeles, CA 90095
City Los angeles
State/province CA
ZIP/Postal code 91436
Country USA
Platform ID GPL21493
Series (1)
GSE124068 Transcriptome analysis of mdx hearts and skeletal muscles treated with cardiac progenitor cells and their exosomes
BioSample SAMN10612576
SRA SRX5161797

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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