|
Status |
Public on Feb 12, 2019 |
Title |
Y00029: tech. rep. 3 |
Sample type |
SRA |
|
|
Source name |
medium size tumor
|
Organism |
Mus musculus |
Characteristics |
tissue: pancreatic ductal adenocarcinoma (PDAC) tumor strain: KPC
|
Treatment protocol |
These were untreated control mice and did not receive any treatment
|
Growth protocol |
Mice received standard care approved by an IACUC protocol.
|
Extracted molecule |
total RNA |
Extraction protocol |
Mitlenyi Mouse Tumor Dissociation Kit 10x Genomics Chromium Single Cell 3’ Library Kit (v2 chemistry) Pair ended library with 16bp 10X barcode and i7 sample index
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
HanSeq_0004_1_PA_SCS_T1_XCSCR_Y00029_H5HVVBGX5_GGACACGT
|
Data processing |
10xGenomics CellRanger pull out the UMI matrix from the filtered folder Genome_build: mm10
|
|
|
Submission date |
Feb 11, 2019 |
Last update date |
Feb 13, 2019 |
Contact name |
Wei Lin |
E-mail(s) |
wlin@tgen.org
|
Organization name |
Translational Genomics Research Institute
|
Department |
Division of Molecular Medicine
|
Street address |
445 N. Fifth St.
|
City |
Phoenix |
State/province |
AZ |
ZIP/Postal code |
85004 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (1) |
GSE126388 |
Single-cell RNAseq data for pancreatic ductal adenocarcinoma tumor from KPC mice |
|
Relations |
BioSample |
SAMN10910620 |
SRA |
SRX5366436 |