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Sample GSM3597636 Query DataSets for GSM3597636
Status Public on Feb 12, 2019
Title Y00029: tech. rep. 4
Sample type SRA
 
Source name medium size tumor
Organism Mus musculus
Characteristics tissue: pancreatic ductal adenocarcinoma (PDAC) tumor
strain: KPC
Treatment protocol These were untreated control mice and did not receive any treatment
Growth protocol Mice received standard care approved by an IACUC protocol.
Extracted molecule total RNA
Extraction protocol Mitlenyi Mouse Tumor Dissociation Kit
10x Genomics Chromium Single Cell 3’ Library Kit (v2 chemistry)
Pair ended library with 16bp 10X barcode and i7 sample index
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description HanSeq_0004_1_PA_SCS_T1_XCSCR_Y00029_H5HVVBGX5_TACTCTTC
Data processing 10xGenomics CellRanger
pull out the UMI matrix from the filtered folder
Genome_build: mm10
 
Submission date Feb 11, 2019
Last update date Feb 13, 2019
Contact name Wei Lin
E-mail(s) wlin@tgen.org
Organization name Translational Genomics Research Institute
Department Division of Molecular Medicine
Street address 445 N. Fifth St.
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL19057
Series (1)
GSE126388 Single-cell RNAseq data for pancreatic ductal adenocarcinoma tumor from KPC mice
Relations
BioSample SAMN10910619
SRA SRX5366437

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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