|
| Status |
Public on Feb 12, 2019 |
| Title |
Y00087: tech. rep. 1 |
| Sample type |
SRA |
| |
|
| Source name |
large size tumor
|
| Organism |
Mus musculus |
| Characteristics |
tissue: pancreatic ductal adenocarcinoma (PDAC) tumor
strain: KPC
|
| Treatment protocol |
These were untreated control mice and did not receive any treatment
|
| Growth protocol |
Mice received standard care approved by an IACUC protocol.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Mitlenyi Mouse Tumor Dissociation Kit
10x Genomics Chromium Single Cell 3’ Library Kit (v2 chemistry)
Pair ended library with 16bp 10X barcode and i7 sample index
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
HanSeq_0017_1_PA_Whole_T1_XCSCR_Y00087_H252CAFXY_ACTTCATA
|
| Data processing |
10xGenomics CellRanger
pull out the UMI matrix from the filtered folder
Genome_build: mm10
|
| |
|
| Submission date |
Feb 11, 2019 |
| Last update date |
Feb 13, 2019 |
| Contact name |
Wei Lin |
| E-mail(s) |
wlin@tgen.org
|
| Organization name |
Translational Genomics Research Institute
|
| Department |
Division of Molecular Medicine
|
| Street address |
445 N. Fifth St.
|
| City |
Phoenix |
| State/province |
AZ |
| ZIP/Postal code |
85004 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE126388 |
Single-cell RNAseq data for pancreatic ductal adenocarcinoma tumor from KPC mice |
|
| Relations |
| BioSample |
SAMN10910618 |
| SRA |
SRX5366438 |
