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Sample GSM36 Query DataSets for GSM36
Status Public on Jan 24, 2001
Title NHGRI_UACC-1529
Sample type RNA
 
Channel 1
Source name melanoma, lymph node
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: axillary lymph node
Patient sex: male
Patient age: 48
Passage number: 13
p16 mutation status: mutation
Invasive ability: 4.2 +/- 0.5%
Vasculogenic mimicry: +
Gel contraction: -
Cell motility: ND
Scratch wound (%): ND

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date Feb 14, 2019
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 86 149 104 167 8218894 45761.8 18651.2 166 4049.7 471.7 86 149 104 167 8415460 46834.9 19972.4 166 4167.9 273.9 173 0.977 -0.0655023 99.000 0.502 2.574 1.137 0.198 0.860
2 692 158 710 176 741522 3785.1 1305.9 94 4103.4 494.8 692 158 710 176 701948 3693.5 1486.3 96 3774.1 248.7 102 1.025 -0.0447933 99.000 0.502 2.574 1.137 0.198 0.902
3 122 149 140 167 391509 3745.9 2486.8 49 4084.3 469.4 122 149 140 167 398942 3840.1 3071.7 46 4138.7 267.4 58 0.975 -0.0665133 99.000 0.502 2.574 1.137 0.198 0.858
4 728 158 746 176 768949 3738.3 1410.3 100 4108.1 472.7 728 158 746 176 768283 4051.7 1525.1 98 3787.9 260.7 106 0.923 -0.0904443 99.000 0.502 2.574 1.137 0.198 0.812
5 159 149 177 167 1667912 9339.5 3306.1 127 4111.4 471.7 159 149 177 167 2009068 12101.5 4553.1 118 4100.6 261.9 132 0.772 -0.1681303 99.000 0.502 2.574 1.137 0.198 0.679
6 764 158 782 176 6618842 49241.5 17320.7 124 4136.3 528.8 764 158 782 176 6470830 48435.2 19064.3 128 3748.9 276.5 132 1.017 -0.0481773 99.000 0.502 2.574 1.137 0.198 0.895
7 195 149 213 167 3309222 17973.9 6668.4 155 4235.6 523.7 195 149 213 167 1998342 9267.7 4367.7 119 4144.0 304.4 157 1.939 0.2319793 99.000 0.502 2.574 1.137 0.198 1.706
8 801 158 819 176 1956130 16374.1 6443.8 94 4002.2 487.5 801 158 819 176 2624960 23645.8 11101.1 97 3697.6 266.8 104 0.692 -0.2153833 99.000 0.502 2.574 1.137 0.198 0.609
9 232 149 250 167 3801028 20129.3 8268.0 152 4236.2 545.7 232 149 250 167 4493461 24664.8 10634.5 156 4139.4 334.3 164 0.816 -0.1438763 99.000 0.502 2.574 1.137 0.198 0.718
10 837 158 855 176 646838 4271.7 1678.0 81 4021.1 504.4 837 158 855 176 753363 5983.1 4741.3 71 3675.4 257.2 86 0.714 -0.2020403 99.000 0.502 2.574 1.137 0.198 0.628
11 268 149 286 167 2085891 10954.4 4758.9 121 4160.7 524.3 268 149 286 167 5177232 33434.8 14825.4 144 4081.3 335.4 146 0.328 -0.5406083 99.000 0.502 2.574 1.137 0.198 0.288
12 873 158 891 176 90214 1645.1 975.3 10 3993.3 496.6 873 158 891 176 81886 1473.5 455.0 24 3644.4 259.9 24 1.116 -0.0078893 99.000 0.502 2.574 1.137 0.198 0.982
13 79 761 97 779 1561385 11275.1 4530.7 102 4338.8 515.3 79 761 97 779 1135654 7208.1 3392.7 100 4148.4 268.7 108 1.564 0.1386183 99.000 0.502 2.574 1.137 0.198 1.376
14 696 761 714 779 2439721 31606.4 13936.0 74 4271.8 547.0 696 761 714 779 1444016 17415.0 9819.1 62 3820.6 257.0 76 1.815 0.2033053 99.000 0.502 2.574 1.137 0.198 1.597
15 115 761 133 779 3826317 27810.1 11706.9 122 4343.8 508.9 115 761 133 779 4348305 32371.4 13992.2 120 4169.0 303.4 127 0.859 -0.1214783 99.000 0.502 2.574 1.137 0.198 0.756
16 732 761 750 779 996172 5321.6 1692.9 105 4350.0 557.6 732 761 750 779 860791 4556.4 1500.4 104 3800.8 254.5 111 1.168 0.0119933 99.000 0.502 2.574 1.137 0.198 1.028
17 152 761 170 779 2257053 22390.1 8701.0 84 4479.6 576.8 152 761 170 779 1514896 13812.3 6320.5 81 4222.2 332.1 92 1.621 0.1541203 99.000 0.502 2.574 1.137 0.198 1.426
18 768 761 786 779 1069508 5808.8 2045.4 108 4377.0 556.8 768 761 786 779 975584 5535.5 2153.4 103 3755.8 265.4 113 1.049 -0.0347983 99.000 0.502 2.574 1.137 0.198 0.923
19 188 761 206 779 1194803 7402.3 2701.9 104 4427.4 551.1 188 761 206 779 1303058 8700.5 3730.6 99 4201.0 362.9 109 0.851 -0.1255183 99.000 0.502 2.574 1.137 0.198 0.749
20 804 761 822 779 987606 5000.7 1508.3 109 4316.3 540.3 804 761 822 779 940563 5167.6 1760.4 107 3705.7 266.4 114 0.968 -0.0700703 99.000 0.502 2.574 1.137 0.198 0.851

Total number of rows: 8192

Table truncated, full table size 1321 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data provided as supplementary file

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