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Sample GSM361456 Query DataSets for GSM361456
Status Public on Jan 04, 2010
Title Diagnostic_acute_leukemia (AE-#13)
Sample type RNA
 
Source name Diagnostic_acute_leukemia
Organism Homo sapiens
Characteristics Tissue: acute myeloid leukemia
Growth protocol Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis or remission
Extracted molecule total RNA
Extraction protocol Trizol total RNA extraction
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol As per manufacturer (Affymetrix)
Scan protocol As per manufacturer (Affymetrix)
Description none
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jan 16, 2009
Last update date Jan 04, 2010
Contact name Guangchun Song
Phone 901-595-5722
Organization name St Jude Children's Research Hospital
Department Pathology
Lab Klco
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL96
Series (2)
GSE14471 Affymetrix U133A array data for 111 pediatric acute myeloid leukemia (AML) samples at diagnosis
GSE15347 Analysis of pediatric acute myeloid leukemia (AML) samples at diagnosis

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 1347.8
AFFX-BioB-M_at 2872.8
AFFX-BioB-3_at 1286.9
AFFX-BioC-5_at 3524
AFFX-BioC-3_at 2945.1
AFFX-BioDn-5_at 3652.2
AFFX-BioDn-3_at 17619.7
AFFX-CreX-5_at 27571.3
AFFX-CreX-3_at 36597.2
AFFX-DapX-5_at 41
AFFX-DapX-M_at 111.2
AFFX-DapX-3_at 17
AFFX-LysX-5_at 16.6
AFFX-LysX-M_at 32.6
AFFX-LysX-3_at 40.8
AFFX-PheX-5_at 12.5
AFFX-PheX-M_at 12.2
AFFX-PheX-3_at 30.7
AFFX-ThrX-5_at 6.1
AFFX-ThrX-M_at 16.6

Total number of rows: 22283

Table truncated, full table size 359 Kbytes.




Supplementary file Size Download File type/resource
GSM361456.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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