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Sample GSM3618570 Query DataSets for GSM3618570
Status Public on Feb 20, 2020
Title Limb bud cells Bmp2
Sample type RNA
 
Source name Limb bud cells Bmp2
Organism Mus musculus
Characteristics tissue: limb bud
developmental stage: E12.5 day
strain: ICR
genotype: Bmp2
Treatment protocol Limb bud cells were infected with control or Bmp2 adenovirus.
Growth protocol Limb bud cells were cultured with α-ΜΕΜ containing 10% FBS.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Nucleospin RNA kit
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.
 
Hybridization protocol Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 7G.
Description Gene expression data from mouse Lumb bud cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
 
Submission date Feb 22, 2019
Last update date Feb 20, 2020
Contact name Yoshifumi Takahata
E-mail(s) yo.takahata0331@gmail.com
Phone +81-6-6879-2887
Organization name Osaka University
Department Dentistry
Lab Biochemistry
Street address 1-8
City Suita
State/province Osaka
ZIP/Postal code 5650871
Country Japan
 
Platform ID GPL6246
Series (1)
GSE126945 Expression data from Limb bud cells

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10338001 11.44
10338002 7.35878
10338003 9.81053
10338004 8.59895
10338005 2.94524
10338006 3.30618
10338007 3.73877
10338008 4.90739
10338009 9.32966
10338010 2.98468
10338011 6.84927
10338012 3.10642
10338013 2.78072
10338014 2.86807
10338015 2.83033
10338016 8.65049
10338017 12.5546
10338018 7.84221
10338019 6.36582
10338020 9.13555

Total number of rows: 35556

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM3618570_03_BMP2_No_1390_MoGene-1_0-st-v1_.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM3618570_03_BMP2_No_1390_MoGene-1_0-st-v1_.rma-gene-default.chp.gz 255.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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