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Sample GSM3619264 Query DataSets for GSM3619264
Status Public on Feb 26, 2019
Title Sample_82539 HNSCC cell line
Sample type SRA
 
Source name RNA from Cell Lines
Organism Homo sapiens
Characteristics sample id: 82539
cell line: HNSCC
Treatment protocol 10% fetal bovine serum, 7µg/mL penicillin/streptomycin and 1% Non-essential amino acids in 5% CO2 incubator
Growth protocol Cell lines were in log phase growth
Extracted molecule total RNA
Extraction protocol Qiagen Allprep Kit
Illumina TruSEQ Stranded Total RNA
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 4000
 
Description HSC2
FPKM_ProcessedData.xlsx
Data processing Read quality was assessed for each cohort using FastQC (v0.11.5)
Read alignment was performed using STAR (v2.5.3a)
Cufflinks (v2.2.1) was used to compute FPKM
Genome_build: hg19
Supplementary_files_format_and_content: Excel spreadsheet with FPKM values for each Cell line
 
Submission date Feb 23, 2019
Last update date Feb 26, 2019
Contact name Chad Brenner
Organization name University of Michigan
Street address 1500 E Medical Center Drive / Cancer Center 6430
City Ann Arbor
State/province Michigan
ZIP/Postal code 48109
Country USA
 
Platform ID GPL20301
Series (1)
GSE126975 Transcriptomic profiling of head and neck squamous cell carcinoma cell lines
Relations
BioSample SAMN10992847
SRA SRX5413978

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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