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Sample GSM363992 Query DataSets for GSM363992
Status Public on Mar 09, 2009
Title 129X1/SvJ 129X1-SvJ_40-1
Sample type RNA
 
Source name 129X1-SvJ_40-1
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 88.9875 70.2000
2120066 76.2000 61.3000
101740324 89.8187 70.7000
4050095 89.3104 70.4000
1230711 71.9375 58.1000
105860348 82.2583 65.7000
100450072 74.2270 59.8000
3610402 79.7479 63.9000
6110315 83.6333 66.7000
4280670 84.2208 67.1000
2370731 103.5187 77.7000
4200092 70.1958 56.8000
2060546 67.5770 54.8000
106200670 135.2520 92.2000
6110519 73.9500 59.6000
1690441 80.5708 64.5000
101450128 124.5500 86.7000
3190731 343.7645 158.3000
101230164 67.8375 55.0000
3870347 83.3458 66.5000

Total number of rows: 46629

Table truncated, full table size 1168 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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