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Sample GSM363994 Query DataSets for GSM363994
Status Public on Mar 09, 2009
Title 129X1/SvJ 129X1-SvJ_44-5
Sample type RNA
 
Source name 129X1-SvJ_44-5
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 84.8354 61.5000
2120066 72.0291 52.4000
101740324 101.5520 71.2000
4050095 85.4333 61.9000
1230711 79.6645 57.9000
105860348 80.3854 58.4000
100450072 71.7270 52.2000
3610402 79.1354 57.5000
6110315 86.7854 62.8000
4280670 70.8020 51.6000
2370731 100.3187 70.6000
4200092 78.7083 57.2000
2060546 78.0125 56.7000
106200670 149.2625 95.3000
6110519 76.3604 55.5000
1690441 88.3791 63.8000
101450128 127.5479 85.0000
3190731 379.6958 188.5000
101230164 73.4437 53.4000
3870347 80.8187 58.7000

Total number of rows: 46629

Table truncated, full table size 1167 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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