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Sample GSM364002 Query DataSets for GSM364002
Status Public on Mar 09, 2009
Title BALB/cByJ BALB-cByJ_30-1
Sample type RNA
 
Source name BALB-cByJ_30-1
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 80.8125 60.8000
2120066 83.7520 62.7000
101740324 80.9604 60.9000
4050095 86.2000 64.3000
1230711 66.7645 51.0000
105860348 80.5020 60.6000
100450072 78.9270 59.5000
3610402 75.2750 57.0000
6110315 85.4250 63.8000
4280670 89.3812 66.2000
2370731 125.8125 81.5000
4200092 71.8916 54.6000
2060546 69.7520 53.1000
106200670 125.1770 81.2000
6110519 79.4895 59.9000
1690441 82.6812 62.0000
101450128 163.7041 96.3000
3190731 419.5270 180.6000
101230164 80.5020 60.6000
3870347 85.7187 64.0000

Total number of rows: 46629

Table truncated, full table size 1167 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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