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Sample GSM364007 Query DataSets for GSM364007
Status Public on Mar 09, 2009
Title C57BL/6J C57BL-6J_94-5
Sample type RNA
 
Source name C57BL-6J_94-5
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 80.5958 68.8000
2120066 104.4937 91.6000
101740324 95.1208 82.0000
4050095 84.4166 72.0000
1230711 72.1500 61.9000
105860348 81.7708 69.8000
100450072 72.0500 61.8000
3610402 88.3750 75.5000
6110315 80.1000 68.4000
4280670 73.6166 63.1000
2370731 111.5291 98.6000
4200092 60.6000 52.3000
2060546 71.6729 61.5000
106200670 137.3354 124.7000
6110519 74.8458 64.1000
1690441 85.2562 72.7000
101450128 128.8333 115.5000
3190731 192.0687 183.5000
101230164 77.6395 66.4000
3870347 82.3708 70.3000

Total number of rows: 46629

Table truncated, full table size 1174 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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