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Sample GSM364021 Query DataSets for GSM364021
Status Public on Mar 09, 2009
Title LG/J LG-J_60-1
Sample type RNA
 
Source name LG-J_60-1
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 87.2645 66.7000
2120066 96.8750 72.1000
101740324 95.5354 71.4000
4050095 94.6062 70.9000
1230711 73.1250 56.8000
105860348 90.4041 68.6000
100450072 80.0812 61.8000
3610402 74.0979 57.5000
6110315 88.2645 67.3000
4280670 87.6083 66.9000
2370731 131.7812 89.6000
4200092 73.8208 57.3000
2060546 68.5250 53.6000
106200670 100.5333 73.9000
6110519 78.9625 61.0000
1690441 89.5875 68.1000
101450128 165.8312 105.6000
3190731 525.1937 257.9000
101230164 69.6104 54.3000
3870347 83.0125 63.9000

Total number of rows: 46629

Table truncated, full table size 1169 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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