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Sample GSM364023 Query DataSets for GSM364023
Status Public on Mar 09, 2009
Title NOD/LtJ NOD-ShiltJ_112-3
Sample type RNA
 
Source name NOD-ShiltJ_112-3
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 85.0000 71.9000
2120066 85.3979 72.2000
101740324 98.0041 82.1000
4050095 88.0500 74.3000
1230711 73.6958 63.1000
105860348 83.9916 71.1000
100450072 75.6291 64.6000
3610402 83.7125 70.9000
6110315 82.4083 69.9000
4280670 78.7562 67.1000
2370731 205.0916 162.2000
4200092 64.7625 56.1000
2060546 75.2312 64.3000
106200670 123.9458 103.7000
6110519 81.6250 69.3000
1690441 73.4645 62.9000
101450128 163.7041 131.8000
3190731 298.4208 236.5000
101230164 73.6958 63.1000
3870347 79.0104 67.3000

Total number of rows: 46629

Table truncated, full table size 1173 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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