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Sample GSM364030 Query DataSets for GSM364030
Status Public on Mar 09, 2009
Title PL/J PL-J_118-9
Sample type RNA
 
Source name PL-J_118-9
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 79.6500 71.2000
2120066 112.7895 99.1000
101740324 104.3750 92.4000
4050095 87.8416 78.3000
1230711 64.6916 58.8000
105860348 83.5729 74.5000
100450072 72.7166 65.4000
3610402 81.6604 72.9000
6110315 80.9354 72.3000
4280670 73.4270 66.0000
2370731 190.6458 162.9000
4200092 68.2312 61.7000
2060546 84.5041 75.3000
106200670 137.9833 119.0000
6110519 79.9895 71.5000
1690441 84.9520 75.7000
101450128 154.5625 131.8000
3190731 525.0395 454.6000
101230164 76.3958 68.5000
3870347 78.9395 70.6000

Total number of rows: 46629

Table truncated, full table size 1174 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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