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Sample GSM364033 Query DataSets for GSM364033
Status Public on Mar 09, 2009
Title SWR/J SWR-J_140-1
Sample type RNA
 
Source name SWR-J_140-1
Organism Mus musculus
Characteristics Hematopoietic stem/progenitor cells
Extracted molecule polyA RNA
Extraction protocol Trizol LS
Label biotin
Label protocol IVT (see manuscript)
 
Hybridization protocol The samples were applied to MouseWG-6 v1.1 Expression Beadchips and hybridized at 58C for 16-20 hours at high humidity. (See manuscript)
Scan protocol Arrays were scanned on an Illumina BeadArray Reader. (See manuscript)
Description Hematopoietic stem/progenitor cells
Data processing quantile normalization
 
Submission date Jan 23, 2009
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8081
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF ID
VALUE quantile-normalized signal intensity
raw pre-normalization signal intensity

Data table
ID_REF VALUE raw
103290575 84.6083 64.9000
2120066 107.5041 83.5000
101740324 95.0270 73.2000
4050095 87.2166 66.9000
1230711 65.9791 51.0000
105860348 82.6916 63.4000
100450072 72.9000 56.1000
3610402 82.1812 63.0000
6110315 79.8437 61.2000
4280670 74.4145 57.2000
2370731 175.8520 141.0000
4200092 71.3687 55.0000
2060546 80.8333 62.0000
106200670 131.7666 103.0000
6110519 94.0770 72.4000
1690441 79.7104 61.1000
101450128 153.8104 121.4000
3190731 330.1333 276.8000
101230164 80.0812 61.4000
3870347 79.1604 60.7000

Total number of rows: 46629

Table truncated, full table size 1172 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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