|
| Status |
Public on Nov 28, 2019 |
| Title |
D15 |
| Sample type |
genomic |
| |
|
| Source name |
Tonsil
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Large B-cell lymphopma with IRF4 rearrangement
gender: Female
tissue: Frozen tissue
|
| Treatment protocol |
none
|
| Growth protocol |
none
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAs from frozen tissues samples were extracted using the QIAamp DNA Mini Kit.
|
| Label |
biotin
|
| Label protocol |
GenomeWideSNP_6 Affymetrix Genome-Wide Human SNP 6.0 Array
|
| |
|
| Hybridization protocol |
Samples were hybridized onto GenomeWideSNP_6 Affymetrix Genome-Wide Human SNP 6.0 Array and were washed and stained with GeneChip Fluidics Station 450 (Affymetrix)
|
| Scan protocol |
GeneChip Scanner 3000 7G (Affymetrix)
|
| Description |
Affymetrix Genome-Wide Human SNP 6.0 Array
|
| Data processing |
Nexus biodiscovery 9.0 edition Software
Gains and losses were evaluated with visual inspection by 2 different observers using Nexus Biodiscovery software (Biodiscovery, Hawthorne CA, USA). The CNAs with a minimum size of 100kb were considered real. Loss of heterozigosity regions where considered when size was >5Mb.
|
| |
|
| Submission date |
Mar 14, 2019 |
| Last update date |
Nov 29, 2019 |
| Contact name |
Joan Enric Ramiz-Zaldivar |
| E-mail(s) |
ramis@clinic.cat
|
| Phone |
+34 932275400
|
| Organization name |
IDIBAPS
|
| Department |
Molecular Pathology Laboratory
|
| Lab |
Centre Esther Koplowitz (CEK)
|
| Street address |
Rosselló, 153
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE128292 |
Large B-Cell Lymphomas in Pediatric and Young Adults Display Clinically Relevant Molecular Features Distinguishable from Adult Counterparts [SNP] |
| GSE128294 |
Large B-Cell Lymphomas in Pediatric and Young Adults Display Clinically Relevant Molecular Features Distinguishable from Adult Counterparts |
|
