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Sample GSM3670805 Query DataSets for GSM3670805
Status Public on Nov 28, 2019
Title D63
Sample type RNA
 
Source name Laringe
Organism Homo sapiens
Characteristics cell type: Large B-cell lymphopma with IRF4 rearrangement
gender: female
tissue: FFPE
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol Extraction of total RNA from tumor cell-rich areas using RNeasy Mini kit protocol.
Label Nanostring Reporter Probes
Label protocol Samples were labeled with Nanostring Reporter Probes.
 
Hybridization protocol hybridization of the samples and Nanostring reporter/capture probes was performed at 65ºC for 16 hours.
Scan protocol cartridges were scanned and counted using the Nanostring scanner at its higher resolution (555 FOVs).
Description nCounter PanCancer Immune Profiling Panel
Data processing Normalitzation with nSolver Analysis Software 4.0. Standard normalization uses a combination of Positive Control Normalization, which uses synthetic positive control targets, and CodeSet Content Normalization, which uses housekeeping genes, to apply a sample-specific correction factor to all the target probes within thatsample lane.
 
Submission date Mar 14, 2019
Last update date Nov 29, 2019
Contact name Joan Enric Ramiz-Zaldivar
E-mail(s) ramis@clinic.cat
Phone +34 932275400
Organization name IDIBAPS
Department Molecular Pathology Laboratory
Lab Centre Esther Koplowitz (CEK)
Street address Rosselló, 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL19965
Series (2)
GSE128293 Large B-Cell Lymphomas in Pediatric and Young Adults Display Clinically Relevant Molecular Features Distinguishable from Adult Counterparts [Nanostring]
GSE128294 Large B-Cell Lymphomas in Pediatric and Young Adults Display Clinically Relevant Molecular Features Distinguishable from Adult Counterparts

Data table header descriptions
ID_REF
VALUE nSolver-computed normalized and counts.

Data table
ID_REF VALUE
A2M 1552.94
ABCB1 58.87
ABL1 534.6
ADA 1723.17
ADORA2A 495.08
AICDA 86.23
AIRE 4.15
AKT3 759.55
ALCAM 665.31
AMBP 1.52
AMICA1 1314.31
ANP32B 8488.28
ANXA1 35375.48
APOE 9146.4
APP 1229.2
ARG1 1.52
ARG2 36.07
ATF1 320.29
ATF2 1052.89
ATG10 143.98

Total number of rows: 780

Table truncated, full table size 9 Kbytes.




Supplementary file Size Download File type/resource
GSM3670805_D63.RCC.gz 8.5 Kb (ftp)(http) RCC
Processed data included within Sample table

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