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Sample GSM3681 Query DataSets for GSM3681
Status Public on Jun 14, 2003
Title Treg clone Tr1D1 pure
Sample type SAGE
Anchor NlaIII
Tag Count 12101
Tag Length 10
 
Source name CD4+ Tr1-like clone H-Y specific (resting)
Organism Mus musculus
Extracted molecule total RNA
 
Description A CD4+ Treg/Tr1-like clone from a naive A1xRAG-1-/- TCR transgenic mouse specific for H-Y + H2Ek. mRNA was derived from >99% CD4+ T cells 7 days from last stimulation, and contains <0.1% mast cells. cDNA was preamplified (SMART) before SAGE analysis.
 
Submission date Jan 15, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (2)
GSE205 Mouse T helper cell clones
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
GTGGCTCACA 431 35616.89
GCGGCGGATG 212 17519.21
CACAAACGGT 204 16858.11
CGCCGCCGGC 168 13883.15
AGAGCGAAGT 150 12395.67
GCTGCCCTCC 110 9090.16
ATTTGTGCAG 104 8594.33
CCCTGAGTCC 100 8263.78
CAAGGTGACA 90 7437.40
TTGGTGAAGG 84 6941.58
CCCGTGTGCT 82 6776.30
CCCCAGCCAG 70 5784.65
TGACCCCGGG 69 5702.01
CTGTAGGTGA 68 5619.37
AGGCAGACAG 62 5123.54
AGGAAGGCGG 60 4958.27
CAGAACCCAC 60 4958.27
TCTGGACGCG 57 4710.35
CACCACCACA 56 4627.72
CTGCTTTGTG 55 4545.08

Total number of rows: 5044

Table truncated, full table size 94 Kbytes.




Supplementary data files not provided

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