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Sample GSM3684543 Query DataSets for GSM3684543
Status Public on Aug 20, 2020
Title HSC_P7 scRNA-seq
Sample type SRA
 
Source name Hematopoietic stem cell
Organism Mus musculus
Characteristics strain background: B6
age: P7
tissue: Hematopoietic stem cell
Extracted molecule total RNA
Extraction protocol 10x Genomcis Chromium single cell preparation
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Description scRNA-seq
Data processing Generation of fastq files via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Alignment to mm10 genome build via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Genome_build: mm10
Supplementary_files_format_and_content: barcodes.tsv, genes.tsv, matrix.mtx
 
Submission date Mar 24, 2019
Last update date Aug 21, 2020
Contact name Jeffery Magee
E-mail(s) magee_j@kids.wustl.edu
Organization name Washington University School of Medicine
Department Internal Medicine - Cardiovascular Division
Street address 660 S Euclid Ave.
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21493
Series (2)
GSE128761 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (scRNA-seq)
GSE128762 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution
Relations
BioSample SAMN11245126
SRA SRX5565552

Supplementary file Size Download File type/resource
GSM3684543_hsc.barcodes.tsv.gz 52.0 Kb (ftp)(http) TSV
GSM3684543_hsc.genes.tsv.gz 212.5 Kb (ftp)(http) TSV
GSM3684543_hsc.matrix.mtx.gz 92.1 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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