|
Status |
Public on Aug 20, 2020 |
Title |
HPC_Adult scRNA-seq |
Sample type |
SRA |
|
|
Source name |
Hematopoietic progenitor cell
|
Organism |
Mus musculus |
Characteristics |
strain background: B6 age: 8 weeks old tissue: Hematopoietic progenitor cell
|
Extracted molecule |
total RNA |
Extraction protocol |
10x Genomcis Chromium single cell preparation
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
|
|
Description |
scRNA-seq
|
Data processing |
Generation of fastq files via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest Alignment to mm10 genome build via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest Genome_build: mm10 Supplementary_files_format_and_content: barcodes.tsv, genes.tsv, matrix.mtx
|
|
|
Submission date |
Mar 24, 2019 |
Last update date |
Aug 21, 2020 |
Contact name |
Jeffery Magee |
E-mail(s) |
magee_j@kids.wustl.edu
|
Organization name |
Washington University School of Medicine
|
Department |
Internal Medicine - Cardiovascular Division
|
Street address |
660 S Euclid Ave.
|
City |
St Louis |
State/province |
Missouri |
ZIP/Postal code |
63110 |
Country |
USA |
|
|
Platform ID |
GPL21493 |
Series (2) |
GSE128761 |
Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (scRNA-seq) |
GSE128762 |
Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution |
|
Relations |
BioSample |
SAMN11245120 |
SRA |
SRX5565558 |