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Sample GSM3684550 Query DataSets for GSM3684550
Status Public on Aug 20, 2020
Title E16_5_WT_HPC scRNA-seq
Sample type SRA
Source name Hematopoietic progenitor cell
Organism Mus musculus
Characteristics strain background: B6
age: E16.5
tissue: Hematopoietic progenitor cell
Extracted molecule total RNA
Extraction protocol 10x Genomcis Chromium single cell preparation
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description scRNA-seq
Data processing Generation of fastq files via
Alignment to mm10 genome build via
Genome_build: mm10
Supplementary_files_format_and_content: barcodes.tsv, genes.tsv, matrix.mtx
Submission date Mar 24, 2019
Last update date Aug 21, 2020
Contact name Jeffery Magee
Organization name Washington University School of Medicine
Department Internal Medicine - Cardiovascular Division
Street address 660 S Euclid Ave.
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
Platform ID GPL21493
Series (2)
GSE128761 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (scRNA-seq)
GSE128762 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution
BioSample SAMN11245119
SRA SRX5565559

Supplementary file Size Download File type/resource
GSM3684550_hpc.barcodes.tsv.gz 75.8 Kb (ftp)(http) TSV
GSM3684550_hpc.genes.tsv.gz 212.5 Kb (ftp)(http) TSV
GSM3684550_hpc.matrix.mtx.gz 160.1 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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